Redesign key quantity extraction/insertion pipeline#205

Merged

sbreitbart-NOAA merged 23 commits intomainfrom

Mar 31, 2026

Commits on Mar 30, 2026

Create first draft of key quantities template csv; start drafting pipeline to add kqs to it in landings plot
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Finished draft of key quantities pipeline for landings plot
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Reorder KQs in plot_landings() by logical grouping; update plot_recruitment_deviations() to work with new KQ extraction/insertion design
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update plot_fishing_mortality() to work with new KQ extraction/insertion design
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update plot_stock_recruitment() to work with new KQ extraction/insertion design
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update plot_abundance_at_age() to work with new KQ extraction/insertion design
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update plot_biomass_at_age() to work with new KQ extraction/insertion design
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update plot_indices() to work with new KQ extraction/insertion design
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update plot_natural_mortality() to work with new KQ extraction/insertion design
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update plot_biomass() to work with new KQ extraction/insertion design
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update plot_spawning_biomass() to work with new KQ extraction/insertion design
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update plot_catch_comp() to work with new KQ extraction/insertion design
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update plot_recruitment() to work with new KQ extraction/insertion design
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update table_landings() to work with new KQ extraction/insertion design
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Update plot_biomass() and plot_spawning_biomass() so that values are accurate when relative = TRUE; update plot_indices() documentation
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Update plot_fishing_mortality() so that values are accurate when relative = TRUE
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Remove write_captions() and add_more_key_quants() functions and update documentation
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Add documentation for new functions
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Round numeric key quantities to 3 digits
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Update tests
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Update vignettes with new KQs workflow; change package syntax from `` to {}
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Ensure age calculated properly for at_age plots; update global variables
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Update vignette; add KQ meanings to template; add notes
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