Conversation
|
Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.5.1. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
|
@nf-core-bot fix linting |
|
@georgiakes This PR requires a bit of attention if you dont mind :) I am introducing a new method which is a common approach to generate a proxy truth set where golden set of truth is not available. The idea is to merge input test VCFs, and keep only common (>n) variants - usually majority. Can you check the logic and text and I have added to see if it makes sense? Plus, I generated a new metromap looking forward for your comments :) |
…nf-core/variantbenchmarking into majority-rule-ensemble-approach
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).