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LouisLeNezet
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Apr 13, 2026
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I would suggest a few changes to make this integration similar to all the other tools used at the moment.
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| #### `quilt` | ||
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| The required inputs for `quilt` are BAM/CRAM samples provided in the input samplesheet (`--input`) and a CSV file with the genomic chunks (`--chunks`). |
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Should we add a similar part for quilt2 ?
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This sbwf should be in nf-core as all the other one.
Co-authored-by: Louis Le Nézet <58640615+LouisLeNezet@users.noreply.github.com>
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Closes #116