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Add varnet (https://github.com/skandlab/VarNet)#11787

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kiranchari wants to merge 3 commits into
nf-core:masterfrom
kiranchari:add-varnet
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Add varnet (https://github.com/skandlab/VarNet)#11787
kiranchari wants to merge 3 commits into
nf-core:masterfrom
kiranchari:add-varnet

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PR checklist

Closes #XXX

  • [add varnet somatic variant caller] This comment contains a description of changes (with reason).
  • [yes] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [tests passed] If necessary, include test data in your PR.
  • [done] Remove all TODO statements.
  • [yes] Broadcast software version numbers to topic: versions - See version_topics
  • [yes] Follow the naming conventions.
  • [yes] Follow the parameters requirements.
  • [yes] Follow the input/output options guidelines.
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [done] nf-core modules test <MODULE> --profile docker

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