pathogen-repo-build: Support artifact-paths with AWS Batch#164
Merged
pathogen-repo-build: Support artifact-paths with AWS Batch#164
Conversation
Without this, the workflow execution happens in the run-build job instead of the wait-N jobs.
6941e1a to
bfa71f3
Compare
This is now possible with the wait-N jobs.
bfa71f3 to
e716626
Compare
This allows the full build log to be uploaded upon completion, matching behavior in run-build with local runtimes.
joverlee521
reviewed
Mar 19, 2026
8e106ec to
8281273
Compare
joverlee521
added a commit
to nextstrain/seasonal-flu
that referenced
this pull request
Mar 20, 2026
… builds Ensuring we don't include private builds in public GH Action artifacts in anticipation of nextstrain/.github#164
2 tasks
joverlee521
added a commit
to nextstrain/seasonal-flu
that referenced
this pull request
Mar 20, 2026
… builds Ensuring we don't include private builds in public GH Action artifacts in anticipation of nextstrain/.github#164
Unlike local runtimes, where uploaded artifacts are the only copy of generated files, AWS Batch instances temporarily persist files after the run finishes. This means it's not important to upload the auspice/ and results/ folders, which could contain private or large data.
8281273 to
337b4a9
Compare
joverlee521
approved these changes
Mar 23, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This is now possible with the wait-N jobs.
Should improve debugging experience for workflows using the AWS Batch runtime.
Checklist
auspice/andresults/