module.report.taxa
Modules in the biolockj.module.report.taxa package process ParserModule output to produce or process taxa tables.
#BioModule biolockj.module.report.taxa.AddMetadataToTaxaTables
Description: Map metadata onto taxa tables using sample ID.
- metadata.columnDelim
- metadata.commentChar
- metadata.filePath
- metadata.nullValue
- report.taxonomyLevels
#BioModule biolockj.module.report.taxa.BuildTaxaTables
Description: Process ParserModule output to produce taxa tables. This module reads the most recent OTU count files generated by any previous BioModule and re-writes the data as separate tables containing taxa counts for each taxonomy level.
- report.taxonomyLevels
#BioModule biolockj.module.report.taxa.LogTransformTaxaTables
Description: Log-transform the raw taxa counts on Log10 or Log-e scales.
- report.logBase
#BioModule biolockj.module.report.taxa.NormalizeTaxaTables
Description: Normalize taxa tables
- report.logBase
BioLockJ: data-wrangling done right.