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AnnotSV 3.5.8 VCF to BED error

Status: Open.

#332 In lgmgeo/AnnotSV;

· chaochaowong opened on Apr 23, 2026

Split VCF INFO fields from the -SVinputInfo option

new functionality requested

Status: Open.

#331 In lgmgeo/AnnotSV;

· thomasguignard opened on Apr 17, 2026

Problem installing the new version

bugSomething isn't workingSomething isn't working

Status: Open.

#328 In lgmgeo/AnnotSV;

· RomualdoMF opened on Apr 15, 2026

PhenoGenius not being installed when using bioconda

bugSomething isn't workingSomething isn't working

Docker/Singularity/Bioconda

HPOExomiser / PhenoGeniusExomiser / PhenoGenius

Status: Open.

#323 In lgmgeo/AnnotSV;

· GACGAMA opened on Mar 6, 2026

Error generating VCF output for CHM13 build

bugSomething isn't workingSomething isn't working

Docker/Singularity/Bioconda

VariantConvert

Status: Open.

#307 In lgmgeo/AnnotSV;

· Sreelekshmi-291 opened on Nov 19, 2025

Exomiser Network unreachable

bugSomething isn't workingSomething isn't working

help wantedExtra attention is neededExtra attention is needed

HPOExomiser / PhenoGeniusExomiser / PhenoGenius

Status: Open.

#306 In lgmgeo/AnnotSV;

· abrusell opened on Nov 10, 2025

Major vs minor Annotations_* difference

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#305 In lgmgeo/AnnotSV;

· Stikus opened on Oct 31, 2025

Invalid VCF according to VCF specification

VariantConvert

vcf output

Status: Open.

#261 In lgmgeo/AnnotSV;

· aligogon opened on Oct 9, 2024

AnnotSV BioConda Environment: Reference Issues For GRCh38

bugSomething isn't workingSomething isn't working

Docker/Singularity/Bioconda

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#255 In lgmgeo/AnnotSV;

· yr542 opened on Sep 6, 2024

vcf errors

bugSomething isn't workingSomething isn't working

VariantConvert

Status: Open.

#245 In lgmgeo/AnnotSV;

· gevro opened on Jul 10, 2024

How to rank/prioritize inversions?

ranking

Status: Open.

#223 In lgmgeo/AnnotSV;

· lgmgeo opened on Mar 21, 2024

Family-based filtering

new functionality requested

SQL database integration

Status: Open.

#205 In lgmgeo/AnnotSV;

· paolomaccallini-hub opened on Dec 1, 2023