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…kage improvements
…ove unnecessary linters
…ratio binding in the mpra namespace
…, and LICENSE for improved organization and clarity
…st cases, and remove redundant parameters for clarity
…te_rna_df, create_var_df, downsample_barcodes, fit_elements, getLabel, mpra_treat, plot_groups, and BcSetExample
…and improve clarity in package documentation
…yr functions for improved clarity
…istently and update tests for class expectations based on endomorphic argument presence
…mn names in mpra_treat tests
…pralm and normalize_counts
…matization refactor: code improvements and automatization
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Ensure replicate information is used in fitting by applying corr_groups instead of indep_groups