Add a set of yaml files that describe RE import data sources for UI and documentation purposes

README.md

@@ -9,6 +9,7 @@ by KBase apps to fetch data from the database.
 * **Schemas** are [JSON schemas](https://json-schema.org/) that define what form of data can be stored in
 the database's collections.
 * **Migrations** are python modules that connect to the database and are responsible for transitioning the data in a collection from an old schema to a newer one.
+* **Data sources** (in `data_sources/`) contains some general information about where some of our imported data comes from.
 
 ## Development
 

data_sources/envo_ontology.yaml

@@ -0,0 +1,5 @@
+name: envo_ontology
+category: ontology
+namespace_title: Environment Ontology
+home_url: http://www.obofoundry.org/ontology/envo.html
+data_url: http://www.obofoundry.org/ontology/envo.html

data_sources/go_ontology.yaml

@@ -0,0 +1,5 @@
+name: go_ontology
+category: ontology
+namespace_title: Gene Ontology
+home_url: http://geneontology.org/
+data_url: http://release.geneontology.org/

data_sources/gtdb_taxonomy.yaml

@@ -0,0 +1,5 @@
+name: gtdb_taxonomy
+category: taxonomy
+namespace_title: GTDB Taxonomy
+home_url: https://gtdb.ecogenomic.org
+data_url: https://data.ace.uq.edu.au/public/gtdb/data/releases/

data_sources/ncbi_taxonomy.yaml

@@ -0,0 +1,5 @@
+name: ncbi_taxonomy
+category: taxonomy
+namespace_title: NCBI Taxonomy
+home_url: https://www.ncbi.nlm.nih.gov/taxonomy
+data_url: ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/

data_sources/rdp_taxonomy.yaml

@@ -0,0 +1,5 @@
+name: rdp_taxonomy
+category: taxonomy
+namespace_title: Ribosomal Database Project
+home_url: http://rdp.cme.msu.edu/taxomatic/main.spr
+data_url: http://rdp.cme.msu.edu/misc/resources.jsp