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improve storage of maxrep string depths

Status: Open.

#22 In jnalanko/VOMM;

· jnalanko opened on Apr 6, 2018

Computing reverse BWT (todo: reuse the bibwt)

Status: Open.

#18 In jnalanko/VOMM;

· jnalanko opened on Mar 28, 2018

Check that the output directory exists on startup

Status: Open.

#17 In jnalanko/VOMM;

· jnalanko opened on Mar 28, 2018

BPR building uses counters, i.e. 64+64 bits per character.

Status: Open.

#9 In jnalanko/VOMM;

· jnalanko opened on Mar 2, 2018

BWT construction

Status: Open.

#7 In jnalanko/VOMM;

· jnalanko opened on Feb 24, 2018

Implement all ancestors scoring

Status: Open.

#5 In jnalanko/VOMM;

· jnalanko opened on Feb 24, 2018

Score query strings in parallel

Status: Open.

#4 In jnalanko/VOMM;

· jnalanko opened on Feb 24, 2018

Optimization: Use single-directional BWT for construction

Status: Open.

#3 In jnalanko/VOMM;

· jnalanko opened on Feb 24, 2018