v1.0.0

LongTrack is a novel framework that uses long-read metagenomic assemblies and reliable informatics tailored for FMT strain tracking. The core idea of LongTrack is based on (1) long read metagenomic sequencing data generated for the donors’ and recipients’ samples before FMT to construct de novo metagenome-assembled genomes (long-read MAGs), (2) selecting strain-specific unique k-mers from long read MAGs, and (3) the use of unique k-mers and short read metagenomic data for precision strain tracking.