chore: setup ruff

[JaeAeich]

Description

Please include a summary of the change and which issue is fixed. Please also include relevant motivation and context. List any dependencies that are required for this change.

Fixes #237
Fixes #238
Fixes #239

Summary by Sourcery

Chores:

• Configures Ruff, a fast Python linter and formatter, to improve code quality and consistency.

[sourcery-ai]

Reviewer's Guide by Sourcery

This pull request migrates the project from pip to poetry for dependency management, build process, and applies formatting and linting using ruff.

No diagrams generated as the changes look simple and do not need a visual representation.

File-Level Changes

Change	Details	Files
Replaced pip with poetry for dependency management and build process.	Removed requirements.txt, requirements_dev.txt, and requirements_docs.txt. Added pyproject.toml and poetry.lock for poetry configuration. Modified Dockerfile to use poetry for installing dependencies and building the application. Updated .github/workflows/checks.yml to use poetry for linting, type checking, and testing. Removed setup.py and setup.cfg.	tests/security/test_auth.py tests/security/access_control/test_access_control_server.py tests/models/test_config.py docker/Dockerfile foca/security/auth.py foca/models/config.py foca/database/register_mongodb.py foca/errors/exceptions.py foca/security/access_control/access_control_server.py foca/security/access_control/register_access_control.py examples/petstore-access-control/controllers.py foca/api/register_openapi.py tests/security/access_control/test_register_access_control.py examples/petstore/controllers.py tests/database/test_register_mongodb.py tests/security/access_control/foca_casbin_adapter/test_adapter.py tests/errors/test_errors.py docs/api/conf.py tests/utils/test_logging.py tests/api/test_register_openapi.py tests/mock_data.py foca/config/config_parser.py .github/workflows/checks.yml foca/factories/connexion_app.py foca/utils/misc.py tests/utils/test_db.py .readthedocs.yaml tests/config/test_config_parser.py tests/security/access_control/foca_casbin_adapter/test_casbin_rule.py foca/security/access_control/foca_casbin_adapter/adapter.py foca/factories/celery_app.py foca/utils/logging.py examples/petstore-access-control/app.py examples/petstore/app.py tests/factories/test_connexion_app.py examples/petstore-access-control/exceptions.py foca/security/access_control/foca_casbin_adapter/casbin_rule.py tests/utils/test_misc.py foca/security/access_control/constants.py tests/test_files/model_valid.py tests/test_files/models_petstore.py foca/security/cors.py foca/version.py tests/factories/test_celery_app.py tests/integration_tests.py tests/security/test_cors.py Makefile
Applied formatting and linting using ruff.	Applied formatting changes throughout the codebase to adhere to ruff's style guidelines. Addressed linting issues identified by ruff to improve code quality and maintainability.	tests/security/test_auth.py tests/security/access_control/test_access_control_server.py tests/models/test_config.py docker/Dockerfile foca/security/auth.py foca/models/config.py foca/database/register_mongodb.py foca/errors/exceptions.py foca/security/access_control/access_control_server.py foca/security/access_control/register_access_control.py examples/petstore-access-control/controllers.py foca/api/register_openapi.py tests/security/access_control/test_register_access_control.py examples/petstore/controllers.py tests/database/test_register_mongodb.py tests/security/access_control/foca_casbin_adapter/test_adapter.py tests/errors/test_errors.py docs/api/conf.py tests/utils/test_logging.py tests/api/test_register_openapi.py tests/mock_data.py foca/config/config_parser.py .github/workflows/checks.yml foca/factories/connexion_app.py foca/utils/misc.py tests/utils/test_db.py .readthedocs.yaml tests/config/test_config_parser.py tests/security/access_control/foca_casbin_adapter/test_casbin_rule.py foca/security/access_control/foca_casbin_adapter/adapter.py foca/factories/celery_app.py foca/utils/logging.py examples/petstore-access-control/app.py examples/petstore/app.py tests/factories/test_connexion_app.py examples/petstore-access-control/exceptions.py foca/security/access_control/foca_casbin_adapter/casbin_rule.py tests/utils/test_misc.py foca/security/access_control/constants.py tests/test_files/model_valid.py tests/test_files/models_petstore.py foca/security/cors.py foca/version.py tests/factories/test_celery_app.py tests/integration_tests.py tests/security/test_cors.py Makefile

Assessment against linked issues

Issue	Objective	Addressed	Explanation
#237	Use Black to auto-format code.	❌	The PR uses ruff, not black, to format code.
#237	Include code style check in CI workflow.	✅
#238	Use Pylint to refactor code.	❌	The PR uses ruff, not pylint, to refactor code.
#238	Include code style check in CI workflow.	❌	The PR sets up ruff, not pylint, in the CI workflow.
#239	Use flake8-docstrings to check docstring style.	❌	The PR sets up ruff, a linter, but does not specifically configure or use flake8-docstrings for docstring style checking.
#239	Include docstring style check in CI workflow.	❌	While the PR sets up ruff in CI, it doesn't configure it to specifically check docstring style, nor does it mention flake8-docstrings.

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[JaeAeich]

@sourcery-ai summary

[sourcery-ai]

Hey @JaeAeich - I've reviewed your changes - here's some feedback:

Overall Comments:

• Consider using poetry to manage dependencies instead of requirements.txt and setup.py.
• Consider using black or ruff format to automatically format the code.

Here's what I looked at during the review

• 🟢 General issues: all looks good
• 🟢 Security: all looks good
• 🟢 Testing: all looks good
• 🟢 Complexity: all looks good
• 🟢 Documentation: all looks good

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[JaeAeich]

Note the huge fle changes when I have commented all the extra rules that we use or try to make standard.

[JaeAeich]

Also yes most changes currently are quotation change, but even if I disable the quatation change rule, we would still have similar number of file changes.