Sync with the source at 877d440

pavoljuhas · pavoljuhas · commit e245f63c27b8 · 2019-07-11T17:34:09.000-04:00
diff --git a/diffpy.Structure/index.html b/diffpy.Structure/index.html
diff --git a/doc/libdiffpy/index.html b/doc/libdiffpy/index.html
@@ -1,13 +1,13 @@
 <!DOCTYPE HTML>
  
 <meta charset="UTF-8">
-<meta http-equiv="refresh" content="1; url=http://diffpy.github.io/libdiffpy/">
+<meta http-equiv="refresh" content="0; url=https://diffpy.github.io/libdiffpy/">
  
 <script>
-  window.location.href = "http://diffpy.github.io/libdiffpy/"
+  window.location.href = "https://diffpy.github.io/libdiffpy/"
 </script>
  
 <title>Page Redirection</title>
  
 <!-- Note: don't tell people to `click` the link, just tell them that it is a link. -->
-If you are not redirected automatically, follow the <a href='http://diffpy.github.io/libdiffpy/'>link</a>
+If you are not redirected automatically, follow the <a href='https://diffpy.github.io/libdiffpy/'>link</a>
diff --git a/doc/pyobjcryst/index.html b/doc/pyobjcryst/index.html
@@ -1,13 +1,13 @@
 <!DOCTYPE HTML>
  
 <meta charset="UTF-8">
-<meta http-equiv="refresh" content="1; url=http://diffpy.github.io/pyobjcryst/">
+<meta http-equiv="refresh" content="0; url=https://diffpy.github.io/pyobjcryst/">
  
 <script>
-  window.location.href = "http://diffpy.github.io/pyobjcryst/"
+  window.location.href = "https://diffpy.github.io/pyobjcryst/"
 </script>
  
 <title>Page Redirection</title>
  
 <!-- Note: don't tell people to `click` the link, just tell them that it is a link. -->
-If you are not redirected automatically, follow the <a href='http://diffpy.github.io/pyobjcryst/'>link</a>
+If you are not redirected automatically, follow the <a href='https://diffpy.github.io/pyobjcryst/'>link</a>
diff --git a/doc/srfit/index.html b/doc/srfit/index.html
@@ -1,15 +1,15 @@
 <!DOCTYPE HTML>
 
 <meta charset="UTF-8">
-<meta http-equiv="refresh" content="1; url=http://diffpy.github.io/diffpy.srfit/">
+<meta http-equiv="refresh" content="0; url=https://diffpy.github.io/diffpy.srfit/">
 
 <script>
-  window.location.href = "http://diffpy.github.io/diffpy.srfit/"
+  window.location.href = "https://diffpy.github.io/diffpy.srfit/"
 </script>
 
 <title>Page Redirection</title>
 
 <!-- Note: don't tell people to `click` the link,
 just tell them that it is a link. -->
 If you are not redirected automatically, follow the
-<a href='http://diffpy.github.io/diffpy.srfit/'>link</a>.
+<a href='https://diffpy.github.io/diffpy.srfit/'>link</a>.
diff --git a/doc/srmise/index.html b/doc/srmise/index.html
@@ -1,15 +1,15 @@
 <!DOCTYPE HTML>
 
 <meta charset="UTF-8">
-<meta http-equiv="refresh" content="1; url=http://diffpy.github.io/diffpy.srmise/">
+<meta http-equiv="refresh" content="0; url=https://diffpy.github.io/diffpy.srmise/">
 
 <script>
-  window.location.href = "http://diffpy.github.io/diffpy.srmise/"
+  window.location.href = "https://diffpy.github.io/diffpy.srmise/"
 </script>
 
 <title>Page Redirection</title>
 
 <!-- Note: don't tell people to `click` the link,
 just tell them that it is a link. -->
 If you are not redirected automatically, follow the
-<a href='http://diffpy.github.io/diffpy.srmise/'>link</a>.
+<a href='https://diffpy.github.io/diffpy.srmise/'>link</a>.
diff --git a/doc/srreal/index.html b/doc/srreal/index.html
@@ -1,13 +1,13 @@
 <!DOCTYPE HTML>
  
 <meta charset="UTF-8">
-<meta http-equiv="refresh" content="1; url=http://diffpy.github.io/diffpy.srreal/">
+<meta http-equiv="refresh" content="0; url=https://diffpy.github.io/diffpy.srreal/">
  
 <script>
-  window.location.href = "http://diffpy.github.io/diffpy.srreal/"
+  window.location.href = "https://diffpy.github.io/diffpy.srreal/"
 </script>
  
 <title>Page Redirection</title>
  
 <!-- Note: don't tell people to `click` the link, just tell them that it is a link. -->
-If you are not redirected automatically, follow the <a href='http://diffpy.github.io/diffpy.srreal/'>link</a>
+If you are not redirected automatically, follow the <a href='https://diffpy.github.io/diffpy.srreal/'>link</a>
diff --git a/doc/srxplanar/index.html b/doc/srxplanar/index.html
@@ -1,15 +1,15 @@
 <!DOCTYPE HTML>
 
 <meta charset="UTF-8">
-<meta http-equiv="refresh" content="1; url=http://diffpy.github.io/diffpy.srxplanar/">
+<meta http-equiv="refresh" content="0; url=https://diffpy.github.io/diffpy.srxplanar/">
 
 <script>
-  window.location.href = "http://diffpy.github.io/diffpy.srxplanar/"
+  window.location.href = "https://diffpy.github.io/diffpy.srxplanar/"
 </script>
 
 <title>Page Redirection</title>
 
 <!-- Note: don't tell people to `click` the link,
 just tell them that it is a link. -->
 If you are not redirected automatically, follow the
-<a href='http://diffpy.github.io/diffpy.srxplanar/'>link</a>.
+<a href='https://diffpy.github.io/diffpy.srxplanar/'>link</a>.
diff --git a/doc/structure/index.html b/doc/structure/index.html
@@ -1,15 +1,15 @@
 <!DOCTYPE HTML>
 
 <meta charset="UTF-8">
-<meta http-equiv="refresh" content="1; url=http://diffpy.github.io/diffpy.structure/">
+<meta http-equiv="refresh" content="0; url=https://diffpystructure.readthedocs.io">
 
 <script>
-  window.location.href = "http://diffpy.github.io/diffpy.structure/"
+  window.location.href = "https://diffpystructure.readthedocs.io"
 </script>
 
 <title>Page Redirection</title>
 
 <!-- Note: don't tell people to `click` the link,
 just tell them that it is a link. -->
 If you are not redirected automatically, follow the
-<a href='http://diffpy.github.io/diffpy.structure/'>link</a>.
+<a href="https://diffpystructure.readthedocs.io">link</a>.
diff --git a/doc/utils/index.html b/doc/utils/index.html
@@ -1,13 +1,13 @@
 <!DOCTYPE HTML>
  
 <meta charset="UTF-8">
-<meta http-equiv="refresh" content="1; url=http://diffpy.github.io/diffpy.utils/">
+<meta http-equiv="refresh" content="0; url=https://diffpy.github.io/diffpy.utils/">
  
 <script>
-  window.location.href = "http://diffpy.github.io/diffpy.utils/"
+  window.location.href = "https://diffpy.github.io/diffpy.utils/"
 </script>
  
 <title>Page Redirection</title>
  
 <!-- Note: don't tell people to `click` the link, just tell them that it is a link. -->
-If you are not redirected automatically, follow the <a href='http://diffpy.github.io/diffpy.utils/'>link</a>
+If you are not redirected automatically, follow the <a href='https://diffpy.github.io/diffpy.utils/'>link</a>
diff --git a/products/SrMise.html b/products/SrMise.html
@@ -250,7 +250,7 @@ <h2>Getting Started<a class="headerlink" href="#getting-started" title="Permalin
 <div class="section" id="what-next">
 <h2>What next?<a class="headerlink" href="#what-next" title="Permalink to this headline">¶</a></h2>
 <p>Explore the SrMise
-<a class="reference external" href="http://diffpy.github.io/diffpy.srmise/tutorial/index.html">tutorial</a>!</p>
+<a class="reference external" href="https://diffpy.github.io/diffpy.srmise/tutorial/index.html">tutorial</a>!</p>
 <div class="toctree-wrapper compound">
 </div>
 </div>
diff --git a/products/diffpycmi/contents.html b/products/diffpycmi/contents.html
@@ -112,29 +112,29 @@ <h2>Libraries developed by the DiffPy team<a class="headerlink" href="#libraries
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.srfit">diffpy.srfit</a></p></td>
-<td><p><a class="reference external" href="../../doc/srfit">doc</a></p></td>
+<td><p><a class="reference external" href="https://diffpy.github.io/diffpy.srfit">doc</a></p></td>
 <td><p>Setup and control of general fitting problems.</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.srreal">diffpy.srreal</a></p></td>
-<td><p><a class="reference external" href="../../doc/srreal/">doc</a></p></td>
+<td><p><a class="reference external" href="https://diffpy.github.io/diffpy.srreal">doc</a></p></td>
 <td><p>Python library for calculation of pair based quantities such as
 the pair distribution function (PDF), bond lengths, and bond
 valence sums.</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.structure">diffpy.Structure</a></p></td>
-<td><p><a class="reference external" href="../../doc/structure/">doc</a></p></td>
+<tr class="row-even"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.structure">diffpy.structure</a></p></td>
+<td><p><a class="reference external" href="https://diffpystructure.readthedocs.io">doc</a></p></td>
 <td><p>Light-weigth storage of crystal structure data.</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.utils">diffpy.utils</a></p></td>
-<td><p><a class="reference external" href="../../doc/utils/">doc</a></p></td>
+<td><p><a class="reference external" href="https://diffpy.github.io/diffpy.utils">doc</a></p></td>
 <td><p>General purpose utilities for the diffpy libraries.</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference external" href="https://github.com/diffpy/pyobjcryst">pyobjcryst</a></p></td>
-<td><p><a class="reference external" href="../../doc/pyobjcryst/">doc</a></p></td>
+<td><p><a class="reference external" href="https://diffpy.github.io/pyobjcryst">doc</a></p></td>
 <td><p>Python bindings to the ObjCryst++ crystallographic library.</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference external" href="https://github.com/diffpy/libdiffpy">libdiffpy</a></p></td>
-<td><p><a class="reference external" href="../../doc/libdiffpy/">doc</a></p></td>
+<td><p><a class="reference external" href="https://diffpy.github.io/libdiffpy">doc</a></p></td>
 <td><p>C++ library for calculation of PDF and other real-space
 quantities.</p></td>
 </tr>
@@ -157,8 +157,8 @@ <h2>External libraries<a class="headerlink" href="#external-libraries" title="Pe
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference external" href="https://github.com/diffpy/srfit-sasview">srfit-sasview</a></p></td>
-<td><p><a class="reference external" href="http://www.sasview.org/docs/user/user.html">doc</a></p></td>
-<td><p>Selected modules from <a class="reference external" href="http://www.sasview.org/">SasView</a>, the Small
+<td><p><a class="reference external" href="https://www.sasview.org/docs/user/user.html">doc</a></p></td>
+<td><p>Selected modules from <a class="reference external" href="https://www.sasview.org">SasView</a>, the Small
 Angle Scattering Analysis Software Package.</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference external" href="http://www.reflectometry.org/danse/elements.html">periodictable</a></p></td>
diff --git a/products/diffpycmi/contributecode.html b/products/diffpycmi/contributecode.html
@@ -118,7 +118,7 @@ <h1>How to Contribute Code<a class="headerlink" href="#how-to-contribute-code" t
 function (PDF), bond lengths, and bond
 valence sums.</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.structure">diffpy.Structure</a></p></td>
+<tr class="row-even"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.structure">diffpy.structure</a></p></td>
 <td><p>Handles storage of crystal structure data.</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.utils">diffpy.utils</a></p></td>
diff --git a/products/diffpycmi/index.html b/products/diffpycmi/index.html
@@ -169,15 +169,15 @@ <h2>Documentation<a class="headerlink" href="#documentation" title="Permalink to
 <p>Documentation for packages developed by the DiffPy team is available
 at the links below.</p>
 <ul class="simple">
-<li><p><a class="reference external" href="../../doc/srfit/">diffpy.srfit</a> – configuration and control of data-fitting problems</p></li>
-<li><p><a class="reference external" href="../../doc/srreal/">diffpy.srreal</a> – calculators for pair distribution function, bond
+<li><p><a class="reference external" href="https://diffpy.github.io/diffpy.srfit">diffpy.srfit</a> – configuration and control of data-fitting problems</p></li>
+<li><p><a class="reference external" href="https://diffpy.github.io/diffpy.srreal">diffpy.srreal</a> – calculators for pair distribution function, bond
 valence sums, etc.</p></li>
-<li><p><a class="reference external" href="../../doc/structure/">diffpy.Structure</a> – light-weight representation of crystal
+<li><p><a class="reference external" href="https://diffpystructure.readthedocs.io">diffpy.structure</a> – light-weight representation of crystal
 structures</p></li>
-<li><p><a class="reference external" href="../../doc/pyobjcryst/">pyobjcryst</a> – Python interface to ObjCryst++ crystallographic
+<li><p><a class="reference external" href="https://diffpy.github.io/pyobjcryst">pyobjcryst</a> – Python interface to ObjCryst++ crystallographic
 library</p></li>
-<li><p><a class="reference external" href="../../doc/utils/">diffpy.utils</a> – general purpose utilities for the diffpy libraries</p></li>
-<li><p><a class="reference external" href="../../doc/libdiffpy/">libdiffpy</a> – C++ library for calculation of PDF and other real-space
+<li><p><a class="reference external" href="https://diffpy.github.io/diffpy.utils">diffpy.utils</a> – general purpose utilities for the diffpy libraries</p></li>
+<li><p><a class="reference external" href="https://diffpy.github.io/libdiffpy">libdiffpy</a> – C++ library for calculation of PDF and other real-space
 quantities</p></li>
 </ul>
 <p>See <a class="reference internal" href="contents.html#contents"><span class="std std-ref">DiffPy-CMI contents</span></a> for a complete list
diff --git a/products/mPDF.html b/products/mPDF.html
@@ -99,7 +99,7 @@ <h1>mpdf<a class="headerlink" href="#mpdf" title="Permalink to this headline">¶
 data. The mPDF is calculated by an MPDFcalculator object, which extracts the spin
 positions and spin vectors from a MagStructure object that the MPDFcalculator
 takes as input. The MagStructure object in turn can contain multiple MagSpecies
-objects, which generate magnetic configurations based on a diffpy.Structure object
+objects, which generate magnetic configurations based on a diffpy.structure object
 and a set of propagation vectors and basis vectors provided by the user.
 Alternatively, the user can manually define a magnetic unit cell that will be used
 to generate the magnetic structure, or the magnetic structure can be defined simply
@@ -117,7 +117,7 @@ <h2>Getting Started<a class="headerlink" href="#getting-started" title="Permalin
 <li><p><code class="docutils literal notranslate"><span class="pre">NumPy</span></code> - numerical mathematics and fast array operations for Python</p></li>
 <li><p><code class="docutils literal notranslate"><span class="pre">SciPy</span></code> - scientific libraries for Python</p></li>
 <li><p><code class="docutils literal notranslate"><span class="pre">matplotlib</span></code> - python plotting library</p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">diffpy.Structure</span></code> - diffpy package for generating atomic structure</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">diffpy.structure</span></code> - diffpy package for generating atomic structure</p></li>
 <li><p><code class="docutils literal notranslate"><span class="pre">diffpy.srreal</span></code> - diffpy package for calculating real-space quantities</p></li>
 </ul>
 <p>See the <a class="reference internal" href="mPDFlicense.html"><span class="doc">mpdf license</span></a> for terms and conditions of use.</p>
diff --git a/products/pythonpackages.html b/products/pythonpackages.html
@@ -125,7 +125,7 @@ <h1>Python Packages<a class="headerlink" href="#python-packages" title="Permalin
 function (PDF), bond lengths, and bond
 valence sums.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.structure">diffpy.Structure</a></p></td>
+<tr class="row-odd"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.structure">diffpy.structure</a></p></td>
 <td><p>Handles storage of crystal structure data.</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference external" href="https://github.com/diffpy/diffpy.utils">diffpy.utils</a></p></td>
