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WHO Tuberculosis Rifampicin Resistant Import Data - WHO_TuberculosisRifampicinResistant #2042
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108b25f
WHO Tuberculosis Rifampicin Resistant Import Data
pravnkumar-code 93ceee1
WHO Tuberculosis Rifampicin Resistant Import Data after gemini check
pravnkumar-code 4dcd992
WHO Tuberculosis Rifampicin Resistant Import Data after gemini check
pravnkumar-code 9cfb16d
WHO Tuberculosis Rifampicin Resistant Import Data after gemini check
pravnkumar-code c520652
Merge branch 'master' into tuberculosis_rifampicin_resistant
pravnkumar-cloudsufi 87ec70d
Rename mainfest.json to manifest.json
pravnkumar-cloudsufi c674584
Merge branch 'master' into tuberculosis_rifampicin_resistant
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54 changes: 54 additions & 0 deletions
54
statvar_imports/tuberculosis_rifampicin_resistant/README.md
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| # WHO Tuberculosis: Tuberculosis: Treatment outcomes of people with RR/MDR-TB | ||
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| ## Overview | ||
| This dataset provides the percentage of TB patients who started rifampicin-resistant TB treatment and whose treatment outcome was recorded as treatment success (cured or treatment completed), treatment failed, died, lost to follow-up, or not evaluated, within the reporting period. | ||
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| ## Data Source | ||
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| **Source URL:** | ||
| https://data.who.int/indicators/i/39E4281/F1912F6 | ||
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| The data comes from the official WHO reporting database and includes comprehensive, country-level health metrics detailing annual Tuberculosis notifications and case classifications. | ||
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| ## How To Download Input Data | ||
| To download the data, you'll need to run the provided download script `tuberculosis_rifampicin_resistant_data_download.py`. This script automatically queries the WHO API for the indicator, merges it with the WHO geographical master list to append standard `iso3` country codes, and saves the cleaned `tuberculosis_rifampicin_resistant_input.csv` file inside an "input_files" folder. | ||
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| type of place: Country. | ||
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| statvars: Health / Tuberculosis. | ||
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| years: 2010 to 2022 | ||
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| place_resolution: manually. | ||
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| release_frequency: P1Y | ||
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| ## Processing Instructions | ||
| To process the WHO Tuberculosis data and generate statistical variables, use the following commands from your root `data` directory: | ||
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| **Download input file** | ||
| ```bash | ||
| python3 statvar_imports/tuberculosis_rifampicin_resistant/tuberculosis_rifampicin_resistant_data_download.py | ||
| ``` | ||
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| **For Test Data Run** | ||
| ```bash | ||
| python3 tools/statvar_importer/stat_var_processor.py \ | ||
| --input_data="statvar_imports/tuberculosis_rifampicin_resistant/testdata/tuberculosis_rifampicin_resistant_input.csv" \ | ||
| --pv_map="statvar_imports/tuberculosis_rifampicin_resistant/tuberculosis_rifampicin_resistant_pvmap.csv" \ | ||
| --output_path="statvar_imports/tuberculosis_rifampicin_resistant/output_files/tuberculosis_rifampicin_resistant_output" \ | ||
| --config_file="statvar_imports/tuberculosis_rifampicin_resistant/tuberculosis_rifampicin_resistant_metadata.csv" \ | ||
| --existing_statvar_mcf="gs://unresolved_mcf/scripts/statvar/stat_vars.mcf" | ||
| ``` | ||
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| **For Main data run** | ||
| ```bash | ||
| python3 tools/statvar_importer/stat_var_processor.py \ | ||
| --input_data="statvar_imports/tuberculosis_rifampicin_resistant/input_files/tuberculosis_rifampicin_resistant_input.csv" \ | ||
| --pv_map="statvar_imports/tuberculosis_rifampicin_resistant/tuberculosis_rifampicin_resistant_pvmap.csv" \ | ||
| --output_path="statvar_imports/tuberculosis_rifampicin_resistant/output_files/tuberculosis_rifampicin_resistant_output" \ | ||
| --config_file="statvar_imports/tuberculosis_rifampicin_resistant/tuberculosis_rifampicin_resistant_metadata.csv" \ | ||
| --existing_statvar_mcf="gs://unresolved_mcf/scripts/statvar/stat_vars.mcf" | ||
| ``` | ||
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| #### Refresh type: Fully Autorefresh | ||
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statvar_imports/tuberculosis_rifampicin_resistant/manifest.json
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| { | ||
|
pravnkumar-cloudsufi marked this conversation as resolved.
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| "import_specifications": [ | ||
| { | ||
| "import_name": "WHO_TuberculosisRifampicinResistant", | ||
| "curator_emails": [ | ||
| "support@datacommons.org" | ||
| ], | ||
| "provenance_url": "https://data.who.int/indicators/i/39E4281/F1912F6", | ||
| "provenance_description": "Treatment outcomes among those who started rifampicin-resistant TB treatment during a specified reporting period.", | ||
| "scripts": [ | ||
| "tuberculosis_rifampicin_resistant_data_download.py", | ||
| "../../../tools/statvar_importer/stat_var_processor.py --input_data=input_files/tuberculosis_rifampicin_resistant_input.csv --pv_map=tuberculosis_rifampicin_resistant_pvmap.csv --config_file=tuberculosis_rifampicin_resistant_metadata.csv --output_path=output_files/tuberculosis_rifampicin_resistant_output --existing_statvar_mcf=gs://unresolved_mcf/scripts/statvar/stat_vars.mcf" | ||
| ], | ||
| "import_inputs": [ | ||
| { | ||
| "template_mcf": "output_files/tuberculosis_rifampicin_resistant_output.tmcf", | ||
| "cleaned_csv": "output_files/tuberculosis_rifampicin_resistant_output.csv" | ||
| } | ||
| ], | ||
| "source_files": [ | ||
| "input_files/tuberculosis_rifampicin_resistant_input.csv" | ||
| ], | ||
| "cron_schedule": "0 10 10,21 * *" | ||
| } | ||
| ] | ||
| } | ||
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...ts/tuberculosis_rifampicin_resistant/testdata/tuberculosis_rifampicin_resistant_input.csv
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| IND_ID,INDICATOR_NAME,YEAR,COUNTRY,iso3,DISAGGR_1,VALUE | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2011,Afghanistan,AFG,Successfully treated,66.6666666666667 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2011,Afghanistan,AFG,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2011,Afghanistan,AFG,Died,9.52380952380952 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2011,Afghanistan,AFG,Lost to follow-up,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2011,Afghanistan,AFG,Not evaluated,23.8095238095238 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2012,Afghanistan,AFG,Successfully treated,71.0526315789474 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2012,Afghanistan,AFG,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2012,Afghanistan,AFG,Died,15.7894736842105 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2012,Afghanistan,AFG,Lost to follow-up,7.89473684210526 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2012,Afghanistan,AFG,Not evaluated,5.26315789473684 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2013,Afghanistan,AFG,Successfully treated,63.0434782608696 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2013,Afghanistan,AFG,Treatment failed,2.17391304347826 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2013,Afghanistan,AFG,Died,13.0434782608696 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2013,Afghanistan,AFG,Lost to follow-up,19.5652173913043 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2013,Afghanistan,AFG,Not evaluated,2.17391304347826 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2014,Afghanistan,AFG,Successfully treated,65.1162790697675 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2014,Afghanistan,AFG,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2014,Afghanistan,AFG,Died,11.6279069767442 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2014,Afghanistan,AFG,Lost to follow-up,23.2558139534884 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2014,Afghanistan,AFG,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2015,Afghanistan,AFG,Successfully treated,63.855421686747 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2015,Afghanistan,AFG,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2015,Afghanistan,AFG,Died,16.8674698795181 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2015,Afghanistan,AFG,Lost to follow-up,19.2771084337349 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2015,Afghanistan,AFG,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Afghanistan,AFG,Successfully treated,62.0915032679739 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Afghanistan,AFG,Treatment failed,2.61437908496732 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Afghanistan,AFG,Died,13.7254901960784 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Afghanistan,AFG,Lost to follow-up,20.9150326797386 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Afghanistan,AFG,Not evaluated,0.65359477124183 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,Afghanistan,AFG,Successfully treated,63.9175257731959 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,Afghanistan,AFG,Treatment failed,1.03092783505155 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,Afghanistan,AFG,Died,12.3711340206186 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,Afghanistan,AFG,Lost to follow-up,22.1649484536082 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,Afghanistan,AFG,Not evaluated,0.515463917525773 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Afghanistan,AFG,Successfully treated,68.8073394495413 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Afghanistan,AFG,Treatment failed,2.75229357798165 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Afghanistan,AFG,Died,10.0917431192661 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Afghanistan,AFG,Lost to follow-up,16.8195718654434 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Afghanistan,AFG,Not evaluated,1.52905198776758 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2019,Afghanistan,AFG,Successfully treated,71.2121212121212 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2019,Afghanistan,AFG,Treatment failed,2.02020202020202 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2019,Afghanistan,AFG,Died,8.58585858585859 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2019,Afghanistan,AFG,Lost to follow-up,14.3939393939394 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2019,Afghanistan,AFG,Not evaluated,3.78787878787879 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Afghanistan,AFG,Successfully treated,74.2857142857143 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Afghanistan,AFG,Treatment failed,0.952380952380952 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Afghanistan,AFG,Died,9.84126984126984 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Afghanistan,AFG,Lost to follow-up,13.015873015873 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Afghanistan,AFG,Not evaluated,1.9047619047619 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2021,Afghanistan,AFG,Successfully treated,68.4478371501272 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2021,Afghanistan,AFG,Treatment failed,2.79898218829517 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2021,Afghanistan,AFG,Died,11.1959287531807 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2021,Afghanistan,AFG,Lost to follow-up,16.793893129771 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2021,Afghanistan,AFG,Not evaluated,0.763358778625954 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Afghanistan,AFG,Successfully treated,72.3154362416107 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Afghanistan,AFG,Treatment failed,2.18120805369128 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Afghanistan,AFG,Died,11.0738255033557 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Afghanistan,AFG,Lost to follow-up,13.4228187919463 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Afghanistan,AFG,Not evaluated,1.00671140939597 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2006,Albania,ALB,Successfully treated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2006,Albania,ALB,Treatment failed,100 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2006,Albania,ALB,Died,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2006,Albania,ALB,Lost to follow-up,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2006,Albania,ALB,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2015,Albania,ALB,Successfully treated,100 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2015,Albania,ALB,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Albania,ALB,Successfully treated,100 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Albania,ALB,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Albania,ALB,Died,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Albania,ALB,Lost to follow-up,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2016,Albania,ALB,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Albania,ALB,Successfully treated,75 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Albania,ALB,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Albania,ALB,Died,25 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Albania,ALB,Lost to follow-up,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,Albania,ALB,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2019,Albania,ALB,Successfully treated,50 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2019,Albania,ALB,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2019,Albania,ALB,Died,50 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2019,Albania,ALB,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Albania,ALB,Successfully treated,50 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Albania,ALB,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Albania,ALB,Died,50 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Albania,ALB,Lost to follow-up,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2020,Albania,ALB,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2021,Albania,ALB,Successfully treated,60 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2021,Albania,ALB,Died,20 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2021,Albania,ALB,Not evaluated,20 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Albania,ALB,Successfully treated,66.6666666666667 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Albania,ALB,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Albania,ALB,Died,33.3333333333333 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Albania,ALB,Lost to follow-up,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2022,Albania,ALB,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,American Samoa,ASM,Successfully treated,100 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,American Samoa,ASM,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,American Samoa,ASM,Died,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,American Samoa,ASM,Lost to follow-up,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2017,American Samoa,ASM,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,American Samoa,ASM,Lost to follow-up,100 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2018,American Samoa,ASM,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2009,Angola,AGO,Successfully treated,100 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2009,Angola,AGO,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2009,Angola,AGO,Died,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2009,Angola,AGO,Lost to follow-up,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2009,Angola,AGO,Not evaluated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2011,Angola,AGO,Successfully treated,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2011,Angola,AGO,Treatment failed,0 | ||
| 39E4281F1912F6,Treatment outcomes of people with RR/MDR-TB,2011,Angola,AGO,Died,0 |
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