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1. pycytominer pycytominer Public

   Python package for processing image-based profiling data

   Python 136 40

2. CytoTable CytoTable Public

   Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

   Python 18 6

3. coSMicQC coSMicQC Public

   Single cell Morphology Quality Control (coSMicQC)

   Python 11 3

4. CytoDataFrame CytoDataFrame Public

   An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

   Python 11 2

5. DeepProfiler DeepProfiler Public

   Morphological profiling using deep learning

   Python 124 49

6. copairs copairs Public

   Find profile pairs and compute retrieval metrics between them.

   Python 22 11