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@chaoming0625 chaoming0625 commented Jan 21, 2026

Summary by Sourcery

Update the brainpy.state integration and dependency while improving ecosystem and state module documentation.

Enhancements:

  • Revise the brainpy.state README to provide a full overview, usage guidance, and support information for the state-based programming interface.
  • Update the main README ecosystem section to highlight the brainpy-state package and clarify related project links.

Build:

  • Bump the brainpy_state dependency from 0.0.2 to 0.0.3 in pyproject.toml and drop the uv.lock file.

…EADME with module overview and installation instructions
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sourcery-ai bot commented Jan 21, 2026

Reviewer's Guide

Updates the brainpy_state dependency to version 0.0.3, refreshes and expands documentation around the state-based API, and cleans up project metadata/lock files to align with the new state module packaging.

File-Level Changes

Change Details Files
Expand and modernize documentation for the state-based BrainPy API.
  • Replaced the minimal brainpy.state README with a full module overview describing purpose, features, documentation, source repo, installation, usage, support channels, and licensing details.
  • Standardized README headings and formatting, including explicit description of state-based programming and its integration with BrainPy.
brainpy/state/README.md
Update top-level project README to reflect the broader ecosystem and highlight the new state package.
  • Reordered the ecosystem bullet list to emphasize the brain modeling ecosystem first, followed by examples.
  • Added a new bullet describing the brainpy-state repository and its role in modernizing BrainPy simulation with brainstate syntax.
README.md
Bump the brainpy_state package dependency and align dependency management with the new version.
  • Increased the minimum required version of brainpy_state from 0.0.2 to 0.0.3 in the project dependencies.
  • Removed the uv.lock file, presumably to regenerate or stop tracking a stale/unused lockfile tied to the older dependency set.
pyproject.toml
uv.lock

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@github-actions github-actions bot added documentation Improvements or additions to documentation dependencies Pull requests that update a dependency file build labels Jan 21, 2026
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Hey - I've found 2 issues, and left some high level feedback:

  • The README ecosystem entry for brainpy-state has a typo in the description (ModerizeModernize).
  • Removing uv.lock from version control changes dependency reproducibility; confirm this aligns with the project's dependency management strategy before dropping it.
  • The new license notice in brainpy/state/README.md uses Copyright 2025; consider aligning the year and wording with the main project’s existing license headers for consistency.
Prompt for AI Agents
Please address the comments from this code review:

## Overall Comments
- The README ecosystem entry for `brainpy-state` has a typo in the description (`Moderize``Modernize`).
- Removing `uv.lock` from version control changes dependency reproducibility; confirm this aligns with the project's dependency management strategy before dropping it.
- The new license notice in `brainpy/state/README.md` uses `Copyright 2025`; consider aligning the year and wording with the main project’s existing license headers for consistency.

## Individual Comments

### Comment 1
<location> `brainpy/state/README.md:14` </location>
<code_context>
+- **Explicit State Management**: Clear separation between model state and computation logic
+- **Composable State Transformations**: Build complex models from simple, reusable state components
+- **JAX-compatible**: Fully compatible with JAX's functional programming paradigm and JIT compilation
+- **Hardware Acceleration**: Leverage CPU, GPU, and TPU acceleration through JAX backend
+
+## Documentation
</code_context>

<issue_to_address>
**nitpick (typo):** Consider adding "the" before "JAX backend" for smoother grammar.

For example: “Leverage CPU, GPU, and TPU acceleration through the JAX backend.”

```suggestion
- **Hardware Acceleration**: Leverage CPU, GPU, and TPU acceleration through the JAX backend
```
</issue_to_address>

### Comment 2
<location> `README.md:66` </location>
<code_context>
-- **[brainpy-examples](https://github.com/brainpy/examples)**: Comprehensive examples of BrainPy computation. 
 - **[brain modeling ecosystem](https://brainmodeling.readthedocs.io/)**: A collection of tools and libraries for brain modeling and simulation.
+- **[brainpy-examples](https://github.com/brainpy/examples)**: Comprehensive examples of BrainPy computation. 
+- **[brainpy-state](https://github.com/chaobrain/brainpy.state)**: Moderize BrainPy simulation with `brainstate` syntax.
 - [《神经计算建模实战》 (Neural Modeling in Action)](https://github.com/c-xy17/NeuralModeling)
 - [第一届神经计算建模与编程培训班 (First Training Course on Neural Modeling and Programming)](https://github.com/brainpy/1st-neural-modeling-and-programming-course)
</code_context>

<issue_to_address>
**issue (typo):** Fix the typo "Moderize" → "Modernize".

Change the description to “Modernize BrainPy simulation with `brainstate` syntax.”

```suggestion
- **[brainpy-state](https://github.com/chaobrain/brainpy.state)**: Modernize BrainPy simulation with `brainstate` syntax.
```
</issue_to_address>

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- **Explicit State Management**: Clear separation between model state and computation logic
- **Composable State Transformations**: Build complex models from simple, reusable state components
- **JAX-compatible**: Fully compatible with JAX's functional programming paradigm and JIT compilation
- **Hardware Acceleration**: Leverage CPU, GPU, and TPU acceleration through JAX backend
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nitpick (typo): Consider adding "the" before "JAX backend" for smoother grammar.

For example: “Leverage CPU, GPU, and TPU acceleration through the JAX backend.”

Suggested change
- **Hardware Acceleration**: Leverage CPU, GPU, and TPU acceleration through JAX backend
- **Hardware Acceleration**: Leverage CPU, GPU, and TPU acceleration through the JAX backend

- **[brainpy-examples](https://github.com/brainpy/examples)**: Comprehensive examples of BrainPy computation.
- **[brain modeling ecosystem](https://brainmodeling.readthedocs.io/)**: A collection of tools and libraries for brain modeling and simulation.
- **[brainpy-examples](https://github.com/brainpy/examples)**: Comprehensive examples of BrainPy computation.
- **[brainpy-state](https://github.com/chaobrain/brainpy.state)**: Moderize BrainPy simulation with `brainstate` syntax.
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issue (typo): Fix the typo "Moderize" → "Modernize".

Change the description to “Modernize BrainPy simulation with brainstate syntax.”

Suggested change
- **[brainpy-state](https://github.com/chaobrain/brainpy.state)**: Moderize BrainPy simulation with `brainstate` syntax.
- **[brainpy-state](https://github.com/chaobrain/brainpy.state)**: Modernize BrainPy simulation with `brainstate` syntax.

@chaoming0625 chaoming0625 merged commit ce98797 into master Jan 21, 2026
19 checks passed
@chaoming0625 chaoming0625 deleted the update branch January 21, 2026 09:37
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