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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 71 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 59 9

  3. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 2 1

  4. readii readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 5

  5. orcestra-downloader orcestra-downloader Public

    Seamless CLI access to orcestra datasets

    Python 1

  6. handbook handbook Public

    Lab Handbook For BHKLab

    4

Repositories

Showing 10 of 241 repositories
  • DeepCINET Public
    bhklab/DeepCINET’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 2 Updated Mar 20, 2026
  • readii_2_roqc Public
    bhklab/readii_2_roqc’s past year of commit activity
    Jupyter Notebook 2 1 4 0 Updated Mar 18, 2026
  • med-imagenet Public

    Med-ImageNet processing scripts via Med-ImageTools AutoPipeline

    bhklab/med-imagenet’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 1 1 Updated Mar 18, 2026
  • handbook Public

    Lab Handbook For BHKLab

    bhklab/handbook’s past year of commit activity
    4 0 41 (4 issues need help) 3 Updated Mar 18, 2026
  • aaura-bench-preprocess Public

    Preprocessing of datasets for use in the AAuRA Benchmarking tool.

    bhklab/aaura-bench-preprocess’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Mar 18, 2026
  • ORCESTRA Public

    ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

    bhklab/ORCESTRA’s past year of commit activity
    JavaScript 5 Apache-2.0 2 29 8 Updated Mar 18, 2026
  • bhklab-website Public

    BHK Lab website

    bhklab/bhklab-website’s past year of commit activity
    JavaScript 0 0 6 0 Updated Mar 17, 2026
  • damply Public

    Data Management Plan made simple

    bhklab/damply’s past year of commit activity
    Python 0 0 3 0 Updated Mar 16, 2026
  • bhklab-project-template Public

    Setup FAIR and DMP compliant projects with one command

    bhklab/bhklab-project-template’s past year of commit activity
    Python 2 MIT 0 5 1 Updated Mar 16, 2026
  • AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    bhklab/AnnotationGx’s past year of commit activity
    R 2 MIT 1 9 1 Updated Mar 13, 2026
View all repositories