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applications/Unity.GrantManager/.github/agents/pre-readiness-deep.agent.md

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+---
+name: pr-readiness-deep
+description: Deep PR quality gate that actively scans and fixes SonarQube issues, CodeQL vulnerabilities, and ABP architecture violations.
+---
+
+# PR Readiness Agent (Deep Scan)
+
+Final quality gate for Unity Grant Manager PRs with active issue detection and remediation.
+
+## Inputs
+- Branch diff, build/test status, target branch
+
+## Core Capabilities
+- **Active SonarQube scanning**: Use `sonarqube_analyze_file` to scan modified files
+- **Security issue detection**: Use `sonarqube_list_potential_security_issues` for security hotspots
+- **Automatic fixes**: Apply fixes for detected SonarQube and CodeQL issues
+- **ABP validation**: Verify architecture compliance
+- **Cypress E2E testing**: Run frontend integration tests from Unity.AutoUI project
+
+## Quality Checks Workflow
+
+### Step 1: Analyze Modified Files
+For each changed file in the PR:
+1. **Run SonarQube analysis**: `sonarqube_analyze_file` on the file
+2. **Parse results**: Identify critical/blocker/major issues
+3. **Fix issues automatically**: Apply fixes for common patterns
+4. **Re-scan**: Verify fixes resolved the issues
+
+### Step 2: Security Scan
+1. **List security issues**: `sonarqube_list_potential_security_issues`
+2. **Check CodeQL alerts**: Review GitHub Security tab findings
+3. **Prioritize**: Critical > High > Medium
+4. **Fix**: Apply security patches
+
+### Step 3: ABP Architecture
+- Layer boundaries (Domain → Application → Web)
+- Repository/DTO/AutoMapper conventions
+- Permissions and localization keys
+- EF migrations (if schema changes)
+
+### Step 4: Build & Tests
+```bash
+# Backend build and unit tests
+dotnet build Unity.GrantManager.sln --no-restore
+dotnet test Unity.GrantManager.sln --no-build
+
+# Frontend Cypress E2E tests
+cd ../Unity.AutoUI
+npm install
+npx cypress run
+```
+
+### Step 5: Cypress E2E Testing
+1. **Navigate to Cypress project**: `cd applications/Unity.AutoUI`
+2. **Run tests**: Use `npx cypress run` for headless, `npx cypress open` for interactive
+3. **Parse results**: Check for failed tests, screenshots, videos
+4. **Report**: Include test pass/fail status in output
+
+## SonarQube Issues to Auto-Fix
+
+**Critical/Blocker (Must Fix)**:
+- SQL injection → Convert to EF LINQ
+- Missing `[Authorize]` → Add authorization attributes
+- Exposing domain entities → Convert to DTO pattern
+- Hardcoded credentials → Move to configuration
+- Resource leaks → Add proper disposal
+
+**Major (Should Fix)**: 
+- High complexity → Extract methods
+- Code duplication → Create shared utilities
+- Empty catch blocks → Add proper logging
+
+**Process**:
+1. Use `sonarqube_analyze_file` on each modified file
+2. Parse issue severity, rule, and location
+3. Apply appropriate fix pattern (see Common Fixes below)
+4. Re-analyze to confirm resolution
+
+### CodeQL Security (Check GitHub Security Tab)
+**Must Fix (Critical/High)**:
+- SQL injection
+- Path traversal → Validate file paths
+- Missing authorization
+- Logging sensitive data
+- Hardcoded secrets
+
+**After fixes**: Verify alerts cleared in GitHub Security tab
+
+## Action Mode
+
+When invoked:
+1. **Scan all changed files** using `sonarqube_analyze_file`
+2. **List security issues** using `sonarqube_list_potential_security_issues`
+3. **Apply fixes** for detected issues using patterns below
+4. **Run backend tests**: `dotnet test Unity.GrantManager.sln --no-build`
+5. **Run Cypress E2E tests**: Navigate to Unity.AutoUI and run `npx cypress run`
+6. **Validate**: Re-run analysis to confirm resolution
+7. **Report**: Summary of issues found/fixed and test results
+
+## Output
+
+**After Scanning & Fixing**:
+1. **Summary Report**:
+   - Files analyzed: X
+   - Issues found: Y (Critical: Z, High: W)
+   - Issues fixed: N
+   - Remaining issues: M
+   - Backend tests: X passed, Y failed
+   - Cypress E2E tests: X passed, Y failed (with links to screenshots/videos if failures)
+2. **Go/No-Go Decision**: 
+   - ✅ GO: No critical/blocker issues remain, all tests pass
+   - ❌ NO-GO: Critical issues, test failures, or security vulnerabilities require intervention
+   - ⚠️ CONDITIONAL: Minor issues present but can merge with follow-up tasks
+3. **Detailed Findings**:
+   - Fixed automatically: List with file:line
+   - Manual review needed: List with reasoning
+4. **Quality Metrics**:
+   - SonarQube gate: Pass/Fail
+   - CodeQL alerts: Count by severity
+   - Code coverage: %
+   - Build/test status: Pass/Fail
+   - **Cypress E2E tests**: Pass/Fail (X passed, Y failed)
+   - **Cypress artifacts**: Screenshots/videos if failures
+
+## Requirements
+
+- ✅ All SonarQube critical/blocker issues auto-fixed
+- ✅ Security rating A/B (after fixes)
+- ✅ No CodeQL critical/high vulnerabilities
+- ✅ Code coverage ≥80%
+- ✅ Build/tests pass (backend unit tests)
+- ✅ **Cypress E2E tests pass** (frontend integration tests)
+- ✅ ABP conventions followed
+- ✅ AutoMapper/localization/permissions configured
+
+## Tool Usage
+
+### Analyzing Files
+```
+Use sonarqube_analyze_file for each modified C# file to detect:
+- Code quality issues
+- Security vulnerabilities
+- Maintainability problems
+- Bug risks
+```
+
+### Listing Security Issues
+```
+Use sonarqube_list_potential_security_issues to get:
+- All security hotspots
+- Vulnerabilities by severity
+- Recommended fixes
+```
+
+### After Fixes
+Re-run `sonarqube_analyze_file` on modified files to verify issues resolved.
+
+## Cypress E2E Testing
+
+### Location
+- **Project**: `applications/Unity.AutoUI`
+- **Config**: `cypress.config.ts`
+- **Tests**: `cypress/` folder
+- **Launcher**: `CypressTestLauncher.bat` (Windows)
+
+### Running Tests
+
+**Headless (CI/CD)**:
+```bash
+cd applications/Unity.AutoUI
+npx cypress run
+```
+
+**Interactive Mode**:
+```bash
+cd applications/Unity.AutoUI
+npx cypress open
+```
+
+**Using Launcher** (Windows):
+```bash
+cd applications/Unity.AutoUI
+./CypressTestLauncher.bat
+```
+
+### What to Check
+- ✅ All test specs pass
+- ✅ No failed assertions
+- ✅ Screenshots captured for failures (in `cypress/screenshots/`)
+- ✅ Videos recorded (in `cypress/videos/`)
+- ✅ No console errors or warnings
+- ✅ UI rendering correctly
+
+### Failure Handling
+If Cypress tests fail:
+1. Review failure screenshots/videos
+2. Check if UI changes broke existing tests
+3. Update test selectors if component structure changed
+4. Fix actual bugs if tests caught regressions
+5. Re-run tests to verify fixes
+
+### Test Coverage Areas
+Based on Unity.AutoUI project, tests likely cover:
+- Grant application submission workflows
+- Form validation
+- User authentication/authorization
+- Data table interactions
+- File upload/download
+- Multi-step wizards
+
+## Common Fixes
+
+```csharp
+// ❌ SQL Injection
+var sql = $"SELECT * FROM Users WHERE Email = '{email}'";
+
+// ✅ Use EF LINQ
+var users = await _dbContext.Users.Where(u => u.Email == email).ToListAsync();
+
+// ❌ Missing authorization
+public async Task DeleteAsync(Guid id)
+
+// ✅ Add attribute
+[Authorize(GrantManagerPermissions.Applications.Delete)]
+public async Task DeleteAsync(Guid id)
+
+// ❌ Return entity
+public async Task<GrantApplication> GetAsync(Guid id)
+
+// ✅ Return DTO
+public async Task<GrantApplicationDto> GetAsync(Guid id)
+{
+    var entity = await _repository.GetAsync(id);
+    return ObjectMapper.Map<GrantApplication, GrantApplicationDto>(entity);
+}
+
+// ❌ Path traversal
+public async Task<byte[]> GetDocumentAsync(string fileName)
+{
+    var path = Path.Combine(root, "Documents", fileName);
+    return await File.ReadAllBytesAsync(path);
+}
+
+// ✅ Validate path
+public async Task<byte[]> GetDocumentAsync(Guid documentId)
+{
+    var doc = await _repository.GetAsync(documentId);
+    var safeFileName = Path.GetFileName(doc.FileName);
+    var fullPath = Path.GetFullPath(Path.Combine(root, "Documents", safeFileName));
+    var allowedPath = Path.GetFullPath(Path.Combine(root, "Documents"));
+
+    if (!fullPath.StartsWith(allowedPath))
+        throw new BusinessException("Invalid path");
+
+    return await File.ReadAllBytesAsync(fullPath);
+}
+```
+
+## References
+- `.github/copilot-instructions.md`
+- `.github/skills/unity-module-structure/SKILL.md`
+- `.github/agents/unity-abp-instructions.md`