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Nextclade

Viral genome clade assignment, mutation calling, and sequence quality checks

by Nextstrain team

🌎 clades.nextstrain.org

Animated screenshot of the application, showcasing the user interface on main page

License package.json version

Travis CI production Travis CI staging Travis CI master Security Headers Mozilla Observatory

GitHub last commit GitHub commit activity GitHub contributors DeepScan grade


Download button

Report issue button Request feature button Discuss button


πŸ“¦ Packages

This repository consists of a set of packages presented in the table below. Refer to README files of individual packages for more details.

Package Type Get Docker images
nextclade_web Web App 🌎 clades.nextstrain.org
nextclade_cli Node.js CLI πŸ“¦ @nextstrain/nextclade πŸ‹ nextstrain/nextclade
nextalign C++ library
nextalign_cli C++ executable πŸ“₯ Github Releases πŸ‹ nextstrain/nextalign

✨ Team

Nextclade is a part of Nextstrain logo Nextstrain project .

It is maintained by:

Ivan Aksamentov

Senior Software Engineer
NeherLab, Biozentrum, University of Basel

Richard Neher

Principal Investigator
NeherLab, Biozentrum, University of Basel

We are thankful to all our contributors, no matter how they contribute: in ideas, science, code, documentation or otherwise. Thanks goes to these people (emoji key):


Emma Hodcroft

πŸ€” ⚠️ πŸ“’ πŸ‘€

Thomas Sibley

πŸš‡ πŸ›‘οΈ

Theo Sanderson

πŸ’»

Natalie Stroud

πŸ–‹ 🌍

Alex Rubinsteyn

πŸ“–

Christopher Bottoms

πŸ“–

Finlay Maguire

πŸ“–

This project follows the all-contributors specification. Contributions of any kind welcome!

🏒 Sponsors

We are thankful to the following companies who supported us:

Vercel logo Vercel for sponsoring Nextclade builds on their platform

βš–οΈ License

MIT License

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Assign SARS-CoV-2 clades in the browser

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  • TypeScript 56.3%
  • C++ 18.2%
  • Python 12.5%
  • Shell 4.9%
  • JavaScript 2.7%
  • CMake 2.1%
  • Other 3.3%