Example Input Files

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David DeTomaso edited this page Jul 19, 2016 · 1 revision

Sample input files to demo running FastProject with. Companion to the tutorial here.

Data from Patel and Tirosh et al 2014

Download Files Here

*Note: Additional Files Required: See the README for instructions on where to download

Zip Contents

README.txt: Additional Instructions
run.sh: Bash script file showing how to call FastProject (For OSX/Linux)
run.bat: Windows Batch file showing how to call FastProject (For Windows)
data/
- expression_matrix.txt: Gene expression matrix
- precomputed_signatures.txt: Meta-data (precomputd signatures) for each sample
- published_signatures/
  - cell_cycle_Tirosh.gmt: Cell-cycle signatures in GMT format
  - netPath_ud.txt: Signatures from NetPath in TXT format
  - tcga_sigs.txt: Signatures from TCGA in TXT format
  - tirosh_extras.gmt: Additional signatures in GMT format