This repository contains the complete R code and data to reproduce all figures from the protocol paper of ggalign package.
This repository includes eight protocol directories (protocol1 through protocol8), each containing the corresponding R script that generates all figures for that protocol. The scripts cover:
- Protocol 1: Data-free composition
- Protocol 2: Quad layouts for heatmap visualization
- Protocol 3: Circular layouts for radial data display
- Protocol 4: Stack layouts and nested composition
- Protocol 5: Multi-omics expression heatmaps
- Protocol 6: Somatic mutation oncoplot
- Protocol 7: Circos plots for genomic data
- Protocol 8: Cross-connections between genes and pathways
- R (≥ 4.2.0)
- ggalign (≥ 1.2.0.9000)
For questions about the code or protocols, please open an issue on this repository or contact the corresponding authors.