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MihinP merged 1 commit into from
Jan 23, 2026
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Update README.md #38

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20 changes: 3 additions & 17 deletions README.md
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Expand Up @@ -84,22 +84,9 @@ partinet star \
--conf 0.1
```

## Key Parameters

### Detection
- `--backbone-detector`: Choice of neural network architecture
- `--weight`: Path to model weights
- `--conf-thres`: Detection confidence threshold
- `--iou-thres`: Overlap filtering threshold
- `--device`: GPU device selection

### STAR Generation
- `--conf`: Confidence threshold for particle filtering
- `--output`: Path for final STAR file

## Output Files

1. **Denoised Micrographs** (`denoised/*.mrc`)
1. **Denoised Micrographs** (`denoised/*.png`)
- Cleaned micrographs with improved SNR

2. **Detection Results** (`exp/`)
Expand All @@ -122,9 +109,8 @@ Available commands:
- `denoise`: Clean input micrographs
- `detect`: Identify particles
- `star`: Generate STAR files
- `train`: Train custom models (step1/step2)
- `test`: Evaluate model performance

- `train`: Train custom models
-
## Troubleshooting

- **GPU Issues**
Expand Down