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Merge branch 'ef/dev' of github.com:UCSF-DSCOLAB/data_processing_pipelines into ef/dev
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Moved parameters and container paths defined in nextflow.nf to a tool.config file.
Added a wrapper script to run.
Also updated picard syntax and increased run time to 2h for each process so it works with larger samples.
Tested on a full sample and run completed.