📝 Update Example Notebook 08-nucleus-instance-segmentation.ipynb#993
Open
gozdeg wants to merge 164 commits intodev-define-engines-abcfrom
Open
📝 Update Example Notebook 08-nucleus-instance-segmentation.ipynb#993gozdeg wants to merge 164 commits intodev-define-engines-abcfrom
08-nucleus-instance-segmentation.ipynb#993gozdeg wants to merge 164 commits intodev-define-engines-abcfrom
Conversation
…ntor # Conflicts: # requirements/requirements.txt
for more information, see https://pre-commit.ci
Collaborator
Author
|
Update:
|
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## dev-define-engines-abc #993 +/- ##
==========================================================
+ Coverage 95.33% 99.07% +3.74%
==========================================================
Files 79 80 +1
Lines 10001 10341 +340
Branches 1290 1354 +64
==========================================================
+ Hits 9534 10245 +711
+ Misses 431 64 -367
+ Partials 36 32 -4 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
PR summary:
NucleusInstanceSegmentor.run(...)API for tile and WSI inference, with Zarr outputs.joblib.model,num_workers,patch_mode,output_type,save_dir,auto_get_mask,input_resolutions).