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16 changes: 0 additions & 16 deletions .github/pull_request_template.md

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21 changes: 14 additions & 7 deletions README.md
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# :warning: NOTICE :warning:

This repository is under active development and is not currently in a state for public use. If you wish to use RESPOND, please refer to release [v0.3.0](https://github.com/SyndemicsLab/respond/releases/tag/v0.3.0) for a functioning executable.

# RESPOND: An Opioid Use Disorder State Transition Model

<a href="https://www.syndemicslab.org/respond"><img align="right" src="https://github.com/SyndemicsLab/.github/blob/main/profile/images/RESPOND.png" alt="RESPOND Logo" height="120" /></a>

[![Docs](https://github.com/SyndemicsLab/respond/actions/workflows/deploy-docs.yml/badge.svg)](https://github.com/SyndemicsLab/respond/actions/workflows/deploy-docs.yml)
[![Tests](https://github.com/SyndemicsLab/respond/actions/workflows/test-ubuntu.yml/badge.svg)](https://github.com/SyndemicsLab/respond/actions/workflows/unit-testing.yml)
[![Tests](https://github.com/SyndemicsLab/respond/actions/workflows/unit-testing.yml/badge.svg)](https://github.com/SyndemicsLab/respond/actions/workflows/unit-testing.yml)
![Endpoint Badge](https://img.shields.io/endpoint?url=https%3A%2F%2Fgist.githubusercontent.com%2FMJC598%2F10e746e28df5d23e91689b01493435a0%2Fraw%2Frespond-cobertura-coverage.json)

This is the home of the [RESPOND model](https://syndemicslab.github.io/respond) [1], first created by the [Syndemics Lab](https://www.syndemicslab.org) in 2018, now rewritten with a focus on four primary goals:
Expand Down Expand Up @@ -73,7 +69,7 @@ From there, a simple

```bash
sudo dpkg -i respond-xxx.deb
```
```

command will result in the appropriate installation. The only files added are the public headers, the compiled static library, and the CMake configuration files.

Expand Down Expand Up @@ -103,8 +99,19 @@ target_link_libraries(${PROJECT_NAME}
If you would prefer a single bash script to add the project to the build tree, run:

```shell
./tools/build.sh
tools/build.sh
```

## Running RESPOND

The recommended way to use the RESPOND model is via the [Python
package][respondpy], with [source on GitHub][respondpy-git].

If you wish to use RESPOND via a local executable, please refer to release
[v0.3.0](https://github.com/SyndemicsLab/respond/releases/tag/v0.3.0).

## References
1. Madushani RWMA, Wang J, Weitz M, Linas BP, White LF, Chrysanthopoulou SA (2025) Empirical calibration of a simulation model of opioid use disorder. PLoS ONE 20(3): e0310763. https://doi.org/10.1371/journal.pone.0310763

[respondpy]: https://pypi.org/project/respondpy/
[respondpy-git]: https://github.com/SyndemicsLab/respondpy