Updated gadi report

[fredjaya]

No description provided.

[fredjaya]

Patch with some QoL changes

diff --git a/Scripts/gadi_resource_usage.sh b/Scripts/gadi_resource_usage.sh
index 16f0005..6a88fa6 100755
--- a/Scripts/gadi_resource_usage.sh
+++ b/Scripts/gadi_resource_usage.sh
@@ -5,7 +5,7 @@ module load nextflow
 RUN_NAME="$1"
 
 if [ -z "$RUN_NAME" ]; then
-    echo "No run name supplied. Exiting."
+    echo "No run name supplied. Supply a run name by running nextflow log. Exiting."
     exit 1
 fi
 
@@ -27,7 +27,7 @@ SEARCH_PARAMS=()
 
 nextflow log -f hash,name "$RUN_NAME" > "$TMPOUT"
 
-while read HASH NAME; do
+while read -r HASH _NAME; do
     if $FIRST; then
         SEARCH_PARAMS+=("-path" "*/${HASH}*")
         FIRST=false
@@ -39,7 +39,7 @@ done < "$TMPOUT"
 echo -e "Job_name\tHash\tLog_path\tExit_status\tService_units\tNCPUs_requested\tCPU_time_used\tMemory_requested\tMemory_used\tWalltime_requested\tWalltime_used\tJobFS_requested\tJobFS_used" > "$OUTPUT"
 
 find work -type f \( "${SEARCH_PARAMS[@]}" \) -name ".command.log" | \
-    while read LOG; do
+    while read -r LOG; do
         HASH="${LOG:5:9}"
         JOBNAME=$(grep -m 1 -F "$HASH" "${TMPOUT}" | cut -f 2- )
         awk -v OFS="\t" -v logfile="$LOG" -v hash="$HASH" -v jobname="$JOBNAME" '
@@ -72,7 +72,8 @@ find work -type f \( "${SEARCH_PARAMS[@]}" \) -name ".command.log" | \
         }
         END {
             print jobname, hash, logfile, exit_status, service_units, ncpus_requested, cpu_time_used, memory_requested, memory_used, walltime_requested, walltime_used, jobfs_requested, jobfs_used
-        }' $LOG
+        }' "$LOG"
     done >> "${OUTPUT}"
 
-rm "${TMPOUT}"
\ No newline at end of file
+echo -e "\nSaved to ${OUTPUT}"
+rm "${TMPOUT}"