Add setup.sh environment script#4738
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Co-authored-by: SatoryKono <13055362+SatoryKono@users.noreply.github.com>
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This adds the setup.sh bash script to initialize the project according to user requirements. Co-authored-by: SatoryKono <13055362+SatoryKono@users.noreply.github.com>
This commit addresses: 1. Moves `scripts/setup.sh` to `scripts/ops/setup.sh` to resolve `root-hygiene` CI check failure. 2. Updates `scripts_inventory_manifest.json` and `scripts_lifecycle_registry.json` tracking `setup.sh`, correctly assigning the ownership and metadata lifecycle requirements. 3. Implements `main()` callable in `scripts/engineering/qa/check_quality_exemptions.py` to fix CLI dispatcher errors seen in `governance-preflight` CI step. 4. Uses `ruff` to automatically address and resolve style and syntax validation issues across Python files. Co-authored-by: SatoryKono <13055362+SatoryKono@users.noreply.github.com>
This commit addresses: 1. Moves `scripts/setup.sh` to `scripts/ops/setup.sh` to resolve `root-hygiene` CI check failure. 2. Updates `scripts_inventory_manifest.json` and `scripts_lifecycle_registry.json` tracking `setup.sh`, correctly assigning the ownership and metadata lifecycle requirements. 3. Implements `main()` callable in `scripts/engineering/qa/check_quality_exemptions.py` to fix CLI dispatcher errors seen in `governance-preflight` CI step. 4. Uses `ruff` to automatically address and resolve style and syntax validation issues across Python files. Co-authored-by: SatoryKono <13055362+SatoryKono@users.noreply.github.com>
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Added the required
src/setup.shscript to configure the BioETL environment, handling the--quick,--skip-tests, and--forceflags.PR created automatically by Jules for task 17819454605928969349 started by @SatoryKono