Architecture and Diagrams
This project includes a collection of diagrams illustrating the system architecture, data pipelines, and feature extraction workflows. You can view the Mermaid definitions or the rendered diagrams below.
| Diagram | Mermaid | Image |
|---|---|---|
| System Architecture | assets/system_architecture.mmd |  |
| Configuration | assets/config.mmd |  |
| Diagram | Mermaid | Image |
|---|---|---|
| Data Pipeline | assets/data_pipeline.mmd |  |
| Main Batch Processing | assets/main_batch.mmd |  |
| Example Ingestion | assets/example_ingestion.mmd |  |
| Diagram | Mermaid | Image |
|---|---|---|
| Methods Annotation | assets/methods_annotation.mmd |  |
| Post-Processing Build Methods | assets/post_processing_build_methods.mmd |  |
| Post-Processing Anonymisation | assets/post_processing_anonymisation_high_level.mmd |  |
| Diagram | Mermaid | Image |
|---|---|---|
| Ethnicity Abstractor | assets/ethnicity_abstractor.mmd |  |
| Get BMI | assets/get_bmi.mmd |  |
| Get Demographics | assets/get_demographics.mmd |  |
| Get Diagnostics | assets/get_diagnostics.mmd |  |
| Get Drugs | assets/get_drugs.mmd |  |
| Get Smoking | assets/get_smoking.mmd |  |
| Get News | assets/get_news.mmd |  |
| Get Dummy Data Cohort Searcher | assets/get_dummy_data_cohort_searcher.mmd |  |
| Get Method Bloods | assets/get_method_bloods.mmd |  |
| Get Method Patient Annotations | assets/get_method_pat_annotations.mmd |  |
| Get Treatment Docs (No Terms Fuzzy) | assets/get_treatment_docs_by_iterative_multi_term_cohort_searcher_no_terms_fuzzy.mmd |  |