hashfasta-1.0.0

[1.0.0] - 2026-01-24

Added

• GitHub Actions workflows for check, test, and release
• Rewrite of entire core functionality:
• New subcommands: hash, unique, duplicate, replacing previous flag-based interface.
• Multi-threaded parsing
• Ability to read FASTX from stdin, http/https URLs, and ssh paths.
• Quiet mode (--quiet) to suppress per-record output in hash subcommand.
• JSON output mode (--json)
• Strict mode (--strict) to fail on non-ACGTUN- bases.

Changed

• CLI interface is now subcommand-based
• Hashing now uses xxhash3_64
• Parsing switched from noodles to paraseq with parallel processing.

Removed

• Selectable hash algorithms (--seqhash, --finalhash).
• CLI flags --individual, --duplicates, --fasta, and --fastq (replaced by subcommands).