Add option to only process csv file that are from one day ago.#61
Merged
jeremyestein merged 19 commits intodevfrom Feb 17, 2026
Merged
Add option to only process csv file that are from one day ago.#61jeremyestein merged 19 commits intodevfrom
jeremyestein merged 19 commits intodevfrom
Conversation
…rocess files from yesterday, plus a unit test. TODO get Snakefile to pass parameter based on environment variable.
thompson318
commented
Feb 12, 2026
… range to process from the config file.
1 task
…your dev machine won't intermittently break the tests
jeremyestein
approved these changes
Feb 17, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Addresses #43. This adds a
ONLY_USE_CSV_FROM_YESTERDAYoption to the exporter environment file, which is passed to the Snakefile and then to determine_eventual_outputs which uses date string matching to discard files without a matching date string.The implementation itself is very small (< 10 lines) however this PR appears large as to make it possible to write a unit test to develop and check it I refactored the Snakefile to put some of the python functions in a separate
utils.pyfile. I also refactored some of the tests, putting shared functions intohelpers.py