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@PennLINC

Lifespan Informatics and Neuroimaging Center

The Lifespan Informatics and Neuroimaging Center at the University of Pennylvannia
README.md

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  1. qsiprep qsiprep Public

    Preprocessing of diffusion MRI

    Python 178 62

  2. qsirecon qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    Python 21 17

  3. aslprep aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    Python 54 20

  4. xcp_d xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    Python 109 37

  5. CuBIDS CuBIDS Public

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    Python 30 13

  6. babs babs Public

    BIDS App Bootstrap (BABS)

    Python 12 7

Repositories

Showing 10 of 216 repositories
  • sypres-docs Public
    PennLINC/sypres-docs’s past year of commit activity
    JavaScript 0 MIT 0 3 6 Updated Apr 7, 2026
  • AI2D Public

    Website showcasing AI2D datasets

    PennLINC/AI2D’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 7, 2026
  • grmpy_opendata Public
    PennLINC/grmpy_opendata’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 7, 2026
  • Meisler_ABCD_dMRI Public

    Code and Data Associated with the Meisler et al. Analysis of ABCD DWI (ABCC Release 3.1.0)

    PennLINC/Meisler_ABCD_dMRI’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 7, 2026
  • ModelArrayIO Public

    Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.

    PennLINC/ModelArrayIO’s past year of commit activity
    Python 0 BSD-3-Clause 0 12 8 Updated Apr 7, 2026
  • qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    PennLINC/qsirecon’s past year of commit activity
    Python 21 BSD-3-Clause 17 80 10 Updated Apr 6, 2026
  • ingress2qsirecon Public

    A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.

    PennLINC/ingress2qsirecon’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Apr 6, 2026
  • aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    PennLINC/aslprep’s past year of commit activity
    Python 54 20 42 6 Updated Apr 6, 2026
  • qsiprep Public

    Preprocessing of diffusion MRI

    PennLINC/qsiprep’s past year of commit activity
    Python 178 BSD-3-Clause 62 100 12 Updated Apr 6, 2026
  • transdiagnostic_executive_function Public

    Data resource that combines longitudinal multi-modal imaging data with rich clinical and cognitive phenotyping

    PennLINC/transdiagnostic_executive_function’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 3, 2026
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