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Pavlidis lab

The Pavlidis Lab at the University of British Columbia

17 followers
Vancouver, British Columbia, Canada
https://pavlab.msl.ubc.ca

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neuroexpresso neuroexpresso Public

📊 Gene expression in neuroexpresso database

R 18 1
Gemma Gemma Public

Genomics data re-analysis

Java 24 6
markerGeneProfile markerGeneProfile Public

Marker gene profile estimation method used in NeuroExpresso manuscript

R 14 2

Repositories

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Showing 10 of 69 repositories

Gemma Public
Genomics data re-analysis

PavlidisLab/Gemma’s past year of commit activity

Java 24 Apache-2.0 6 351 37 Updated Jan 22, 2026
baseCode Public
Data structures, math and statistics tools, and utilities that are often needed across projects.

PavlidisLab/baseCode’s past year of commit activity

Java 4 Apache-2.0 0 4 2 Updated Jan 21, 2026
sc-annotation-pipeline Public

PavlidisLab/sc-annotation-pipeline’s past year of commit activity

Python 1 0 4 2 Updated Jan 20, 2026
GemmaAnalysis Public
Code used for some analyses of data in Gemma. Probably not of general utility!

PavlidisLab/GemmaAnalysis’s past year of commit activity

Java 0 0 0 0 Updated Jan 16, 2026
rdp Public
Researcher Gene Registry. Originally developed for the Canadian Rare Disease Models & Mechanisms Network

PavlidisLab/rdp’s past year of commit activity

Java 5 Apache-2.0 7 148 5 Updated Jan 16, 2026
gsec Public
Reusable implementation of the Spring Security framework for lab projects

PavlidisLab/gsec’s past year of commit activity

Java 0 Apache-2.0 0 3 6 Updated Jan 16, 2026
pavlab-starter-parent Public
Curated dependencies for the Pavlidis Lab's Java applications

PavlidisLab/pavlab-starter-parent’s past year of commit activity

0 Apache-2.0 0 4 1 Updated Jan 16, 2026
gemma.R Public
An R wrapper for the Gemma RESTful API

PavlidisLab/gemma.R’s past year of commit activity

R 10 Apache-2.0 1 10 0 Updated Jan 14, 2026
gemmapy Public

PavlidisLab/gemmapy’s past year of commit activity

Python 6 Apache-2.0 1 11 2 Updated Jan 9, 2026
bioluigi Public
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines

PavlidisLab/bioluigi’s past year of commit activity

Python 9 Apache-2.0 0 6 3 Updated Jan 7, 2026

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