Phosphopeptide Mapping Tool

A repository for python code used for pairwise sequence alignment

Output image

full_stack_align.py Output Phosphorylatable Phospho Sites Meta Data

Installation

Clone the repo and install dependencies:

'''bash git clone https://github.com/PathwayAndDataAnalysis/phosphopeptide-mapping-tool.git cd phosphopeptide-mapping-tool pip install -r requirements.txt '''

Set-Up

Download input files before running scripts:

'''bash python download_orthomam_and_uniprot_files.py '''

Usage

Run the application:

'''bash python full_stack_align.py python meta_data_extract_similarity_score.py python meta_data_extract_phospho_sites.py '''

License

MIT License See 'LICENSE' file for details

Credits

Data from OrhtoMaM v12 Data from UniProt 2025