Skip to content

doc: PEtab 2.0 software support #668

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
dweindl wants to merge 1 commit into
base: main
Choose a base branch
from
+20 −3
Draft

doc: PEtab 2.0 software support #668

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions doc/index.rst
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,7 @@

PEtab v2 specs <v2/documentation_data_format.rst>
Tutorial <v2/tutorial/tutorial>
v2/software_support

.. toctree::
:maxdepth: 2
Expand Down
6 changes: 3 additions & 3 deletions doc/v1/software_support.rst
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,10 @@
Software support
================

Where PEtab is supported (in alphabetical order):
Where PEtab 1.0 is supported (in alphabetical order):

* `AMICI <https://github.com/ICB-DCM/AMICI/>`__
(`Example <https://github.com/ICB-DCM/AMICI/blob/master/python/examples/example_petab/petab.ipynb>`__)
* `AMICI <https://github.com/AMICI-dev/AMICI>`__
(`Example <https://amici.readthedocs.io/en/latest/examples/example_petab/petab.html>`__)

* A PEtab -> `COPASI <http://copasi.org/>`__
`converter <https://github.com/copasi/python-petab-importer>`__
Expand Down
16 changes: 16 additions & 0 deletions doc/v2/software_support.rst
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
================
Software support
================

Where PEtab 2.0 is supported (in alphabetical order):

* `AMICI <https://github.com/AMICI-dev/AMICI/>`__
(`Example <https://amici.readthedocs.io/en/latest/examples/example_petab/petab_v2.html>`__)

* `PEtab.jl <https://github.com/sebapersson/PEtab.jl>`__
(`HOWTO <https://sebapersson.github.io/PEtab.jl/stable/>`__)

Work in progress:

* `pyPESTO <https://github.com/ICB-DCM/pyPESTO/>`__
(`PR <https://github.com/ICB-DCM/pyPESTO/pull/1634>`__)