fix: upgrade HTTP links to HTTPS in Rmd source and generated HTML docs (Fixes #790)#791
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fix: upgrade HTTP links to HTTPS in Rmd source and generated HTML docs (Fixes #790)#791rtmalikian wants to merge 1 commit into
rtmalikian wants to merge 1 commit into
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Replaces all http:// URLs with https:// equivalents in 6 Rmd source files and their 9 corresponding generated HTML files in docs/. Affected domains: - athena.ohdsi.org - atlas-demo.ohdsi.org - ohdsi.github.io - forums.ohdsi.org - omop-erd.surge.sh - www.github.com/ohdsi - www.ohdsi.org All HTTPS endpoints verified returning HTTP 200. Fixes OHDSI#790 Signed-off-by: Raphael Malikian <rtmalikian@gmail.com>
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Fixes #790
Problem
Multiple Rmd documentation source files and their generated HTML counterparts use
http://URLs for OHDSI services that fully support HTTPS. This is a security and consistency issue — modern browsers flag HTTP links, and the OHDSI ecosystem has long since migrated to HTTPS.Solution
Replaced all
http://URLs withhttps://equivalents across 6 Rmd source files and their 9 corresponding generated HTML documentation files (total: 15 files, 59 replacements).Affected domains (all verified returning HTTP 200 over HTTPS):
athena.ohdsi.org— vocabulary search linksatlas-demo.ohdsi.org— ATLAS demo linksohdsi.github.io— CDM refresh process linksforums.ohdsi.org— community forum linksomop-erd.surge.sh— interactive ER diagramwww.github.com/ohdsi— GitHub org and tool linkswww.ohdsi.org— ATLAS web linksVerification
curl -s -o /dev/null -w "%{http_code}" -Lreturning HTTP 200grep -rn 'http://' --include='*.Rmd' rmd/returns zero matches after fixgrep -rn 'http://' --include='*.html' docs/returns zero OHDSI-domain matches after fixChangelog
Files Changed
rmd/cdm54erd.Rmd— 1 URL updatedrmd/cdm54.Rmd— 1 URL updatedrmd/index.Rmd— 4 URLs updatedrmd/background.Rmd— 1 URL updatedrmd/dataModelConventions.Rmd— 2 URLs updatedrmd/faq.Rmd— 6 URLs updateddocs/cdm54erd.html— 1 URL updateddocs/cdm54.html— 8 URLs updateddocs/index.html— 6 URLs updateddocs/background.html— 1 URL updateddocs/dataModelConventions.html— 2 URLs updateddocs/faq.html— 7 URLs updateddocs/cdm60.html— 11 URLs updateddocs/cdm53.html— 7 URLs updateddocs/cdm54Changes.html— 1 URL updatedVerification
http://OHDSI-domain links in both Rmd and HTML filesAbout the Author: Raphael Malikian — Clinical AI Solutions Architect. I specialise in building and fixing AI/ML systems for healthcare, including vector databases, RAG pipelines, and clinical NLP. If you need help with your project or think I can add value to your organisation, feel free to reach out — I'd love to connect.
📧 rtmalikian@gmail.com
🔗 GitHub: https://github.com/rtmalikian
🔗 LinkedIn: http://www.linkedin.com/in/raphael-t-malikian-mbbs-bsc-hons-71075436a
Disclosure: This code was developed with assistance from mimo-v2.5-pro (Xiaomi) via Hermes Agent (Nous Research). All changes were reviewed, tested against the actual codebase, and verified for correctness.