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Bump the pip group across 4 directories with 11 updates - #5

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Bump the pip group across 4 directories with 11 updates#5
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Bumps the pip group with 9 updates in the /examples/research_projects/decision_transformer directory:

Package From To
aiohttp 3.8.5 3.14.3
cryptography 42.0.0 50.0.0
gitpython 3.1.32 3.1.58
keras 2.8.0 3.15.0
nltk 3.7 3.10.0
onnx 1.13.0 1.22.0
pillow 10.0.1 12.3.0
pyasn1 0.4.8 0.6.4
ray 1.11.0 2.56.0

Bumps the pip group with 1 update in the /examples/research_projects/distillation directory: gitpython.
Bumps the pip group with 2 updates in the /examples/research_projects/lxmert directory: mistune and tornado.
Bumps the pip group with 2 updates in the /examples/research_projects/visual_bert directory: mistune and tornado.

Updates aiohttp from 3.8.5 to 3.14.3

Changelog

Sourced from aiohttp's changelog.

3.14.3 (2026-07-22)

Bug fixes

  • Fixed the client dropping only the first Authorization, Cookie and Proxy-Authorization header when a redirect crossed an origin -- by :user:arshsmith1.

    Related issues and pull requests on GitHub: :issue:13180.

  • Fixed error message construction in the C HTTP parser -- by :user:bdraco.

    Related issues and pull requests on GitHub: :issue:13222.

3.14.2 (2026-07-20)

Bug fixes

  • Fixed :py:attr:~aiohttp.web.StreamResponse.last_modified rounding a :class:datetime.datetime with a fractional second down.

    Related issues and pull requests on GitHub: :issue:5303.

  • Fixed resolving localhost on Windows to fall back without AI_ADDRCONFIG when the first lookup fails, so localhost still works without an active network.

    Related issues and pull requests on GitHub: :issue:5357.

... (truncated)

Commits

Updates cryptography from 42.0.0 to 50.0.0

Changelog

Sourced from cryptography's changelog.

50.0.0 - 2026-07-31


* **SECURITY ISSUE**:
  :func:`~cryptography.hazmat.primitives.serialization.pkcs7.pkcs7_decrypt_der`
  and its PEM and S/MIME variants no longer expose distinguishable errors or
  timing when unwrapping a ``RecipientInfo``'s ``encryptedKey``, which could
  act as a Bleichenbacher oracle for callers that decrypt untrusted messages.
  A random key is now substituted on failure, as described in :rfc:`3218`.
  Credit to **@X1AOxiang** for reporting the issue. **CVE-2026-69247**
* Deprecated Diffie-Hellman key exchange over finite fields (FFDH).
  Everything FFDH is deprecated, including the types in
  ``cryptography.hazmat.primitives.asymmetric.dh`` and loading FFDH keys or
  parameters with the key loading APIs. Users should migrate to a more
  modern key exchange algorithm.
* Added ``xof()`` class methods to
  :class:`~cryptography.hazmat.primitives.hashes.SHAKE128` and
  :class:`~cryptography.hazmat.primitives.hashes.SHAKE256` for constructing
  algorithm instances configured for use with
  :class:`~cryptography.hazmat.primitives.hashes.XOFHash`.
* The :mod:`X.509 verification <cryptography.x509.verification>` APIs are now
  considered stable and are subject to our API stability policy.
* Added the :doc:`/cobblestone` recipe, an implementation of the
  Cobblestone-128 and Cobblestone-256 instantiations of the `C2SP
  chunked-encryption specification
  <https://c2sp.org/chunked-encryption>`_ for streaming authenticated
  encryption of large messages.
* Parsing a Signed Certificate Timestamp list now rejects encodings that
  carry trailing bytes after the list or after an individual SCT, instead of
  silently ignoring them.
* Added support for using :class:`~cryptography.x509.Name` as a field type in
  the :doc:`/hazmat/asn1/index` module.
* Loading a public key or an EC private key now rejects DER where the
  ``subjectPublicKey`` (or EC ``publicKey``) ``BIT STRING`` declares a non-zero
  number of unused bits, instead of silently ignoring it.
* Parsing a CRL entry's ``InvalidityDate`` extension now rejects a
  ``GeneralizedTime`` that carries fractional seconds or another non-DER form,
  matching the strict encoding already required for every other X.509 time
  field.
* :func:`~cryptography.x509.ocsp.load_der_ocsp_request` and
  :func:`~cryptography.x509.ocsp.load_der_ocsp_response` now reject a request
  or response whose ``version`` field is not ``v1``, the only version defined
  by RFC 6960, matching the version validation already performed when loading
  certificates, CSRs and CRLs.
* :class:`~cryptography.hazmat.primitives.hashes.XOFHash` is now supported
  when building against AWS-LC.
* HMAC (and therefore PBKDF2-HMAC) with SHA-3 hashes is now supported when
  building against AWS-LC.
* Diffie-Hellman (:doc:`/hazmat/primitives/asymmetric/dh`) is now supported
  when building against AWS-LC.
</tr></table>

... (truncated)

Commits

Updates gitpython from 3.1.32 to 3.1.58

Release notes

Sourced from gitpython's releases.

3.1.58 - Security and Fixes

What's Changed

New Contributors

Full Changelog: gitpython-developers/GitPython@3.1.57...3.1.58

3.1.57 - Security and Fixes

What's Changed

New Contributors

Full Changelog: gitpython-developers/GitPython@3.1.56...3.1.57

3.1.56 - SECURITY

What's Changed

Full Changelog: gitpython-developers/GitPython@3.1.55...3.1.56

3.1.55 - Security

What's Changed

... (truncated)

Commits
  • 30be45d prepare changelog for upcoming release
  • fc2f02c Merge pull request #2197 from Cyrus580529/shared-symlink-guard
  • b10e250 test: use the shared guard instead of local copies
  • e3e5da8 test: skip tests that need symlink privileges
  • 30d05e3 test: add a shared symlink capability guard
  • 9a8f6fe Merge pull request #2204 from gitpython-developers/security-fixes
  • f2550b6 Guard pathspec file inputs in high-level commands
  • d9ddb55 Guard unsafe git init options
  • 9b5dcaf Guard read-tree index output paths
  • 96a888f Check joined short-option values before Git execution
  • Additional commits viewable in compare view

Updates keras from 2.8.0 to 3.15.0

Release notes

Sourced from keras's releases.

v3.15.0

Highlights

  • Keras-to-Torch Export: New export_torch enables exporting Keras models to native PyTorch nn.Module format, along with LiteRT (TFLite) export support for the PyTorch backend.
  • Sliding Window Attention: Added sliding_window parameter to MultiHeadAttention and GroupedQueryAttention for efficient long-context attention.
  • Flash / Fused SDPA: Causal-only MHA/GQA now automatically dispatches to Flash Attention (cuDNN SDPA), and the manual attention path correctly applies causal masking.
  • Multi-Optimizer Training: New MultiOptimizer supports assigning different optimizers to sub-networks.
  • New Math Operations: Added unique, pinv, matrix_rank, fabs, fmax, fmin, erfc, dsplit, percentile, nanpercentile, sobel_edges, and ssim (structural similarity) to keras.ops.
  • Security Hardening: Comprehensive hardening of model reloading against HDF5 exploits, tar/zip traversal attacks, insecure deserialization.

New Features and Operations

Multi-Backend Operations

  • New NumPy Operations: Added unique, fabs, fmax, fmin, dsplit, erfc, percentile, nanpercentile in keras.ops.numpy.
  • New Linear Algebra Operations: Added pinv (pseudo-inverse) and matrix_rank in keras.ops.linalg.
  • New Image Operations: Added sobel_edges for edge detection and ssim (structural similarity) in keras.ops.image.
  • Negative Axes in Transpose: keras.ops.transpose now supports negative axis values.

Layers and Attention

  • Sliding Window Attention: MultiHeadAttention and GroupedQueryAttention layers support the sliding_window parameter for efficient long-sequence processing.
  • Flash Attention Engagement: Causal-only attention in MHA/GQA now uses Flash SDPA for significant speedups.
  • Fused Bidirectional LSTM/GRU: JAX backend now fuses Bidirectional LSTM into a single cuDNN call; fused bidirectional GRU added for Torch backend.
  • CTC Beam Search Decoder: Added CTC beam search decoding for the Torch backend.

Training and Optimizers

  • MultiOptimizer: Supports training sub-networks with different optimizers.
  • SKLearn Classifier: Added predict_proba method to SKLearnClassifier.

Export and Deployment

  • Keras-to-Torch Export: Export Keras models to native PyTorch nn.Module via model.export(..., format="torch").
  • LiteRT (TFLite) Export for PyTorch: Added LiteRT export support for models using the PyTorch backend.
  • LiteRT Compatibility Fix: Fixed LiteRT export for Keras 3 + TF 2.20 + Python 3.13.
  • ONNX Export: Support for dict/list inputs in Torch ONNX export; documented static input signature requirement for LiteRT PyTorch export.

Distribution and Parallelism

  • ModelParallel Improvements: Defined contiguous replica-group data shard ID convention; added distribution information (num_processes, num_model_replicas, data_shard_id).
  • Initializer Distribution Layout: Initializers can now handle the distribution layout directly with JAX.
  • TF Dataset Distribution: Refactored TF dataset distribution with centralized sharding routing; fixed data distribution for model training in JAX.

OpenVINO Backend Support

... (truncated)

Commits
  • 9d1bbf9 Add erfinv tests and TensorFlow CPU fallback for half precision (#23086)
  • b34af30 Fix pad_sequences string dtype check (np.bytes_ instead of duplicate np.str_)...
  • f512e93 Fix wrong parameter names in ops.select and ops.argpartition docstrings (#23091)
  • 915ec7e Support native Grouped-Query Attention (GQA) Key/Value head broadcast. (#23081)
  • 49d668d Add JAX multi-process distribution tests (#23105)
  • b49fde7 Refactor rematerialization logic into Operation and support more modes (#23107)
  • e0bfa2d Add to the list of APIs that should not be part of a reloaded model. (#23115)
  • 69d7fd6 Suppress spurious 'Skipping nested container' warning on freshly-saved files ...
  • 048d142 Delete temp files after loading model from remote path. (#23113)
  • 46f5eac Bump GitHub Actions versions to the latest (#23104)
  • Additional commits viewable in compare view

Updates nltk from 3.7 to 3.10.0

Release notes

Sourced from nltk's releases.

v3.10.0

What's Changed

... (truncated)

Changelog

Sourced from nltk's changelog.

Version 3.10.3 2026-08-12

  • docs: wrap Chat-80 HOWTO output
  • Sandbox Stanford JAR execution to nltk_data directories
  • Harden path-traversal / file-I/O sandbox: close write-side symlink TOCTOU + shared-temp squat, lock the cluster with a living audit (CWE-22/59/377)
  • Extend algorithmic-complexity DoS hardening: repo-wide sweep + two-string distances (CWE-407/CWE-400)
  • Bound unbounded-work DoS in parsers and grammar transforms (CWE-407/674/835)
  • fix(security): sandbox MaltParser's Java execution (CVE-2026-12252, CVE-2026-12841)
  • fix(security): trust the system temp dir only when it is private (CWE-377/CWE-378)
  • fix(security): validate corpus-reader roots against the data sandbox (CWE-73)
  • fix(security): validate per-call java() options and replace the -XX:/-D allowlist with a minimal one (CWE-88)
  • Additional security hardening (CWE-407, CWE-426, CWE-427, CWE-502, CWE-59, CWE-776, CWE-918)

Thanks to the following contributors to 3.10.3: Mohammad Favas S, leduckhuong, Ziyu Lin, dougtrainer28-cmyk, Chaitanya Kadian, 0xRenSec, Arpit Jain, Jace, nguyencanhthuong, Liling Tan, medimedi, Eric Kafe.

Version 3.10.2 2026-08-05

  • Remove inisec.py and document PYTHONSAFEPATH instead
  • Skip draft step in release workflow
  • Fix symlink escape in FramenetCorpusReader (CWE-59)
  • Guard tempfile.gettempdir() when building pathsec allowed roots
  • add tests for transitive_closure

Thanks to the following contributors to 3.10.2: Litesh Ghute, Eric Kafe, Evan Kiefer, tarann26 and Rav Singh Chandan

Version 3.10.1 2026-07-29

  • Expand ~ in env-var paths
  • Validate types after WordNet app pickle deserialization
  • Fix uncontrolled search path in HunposTagger
  • Use exact thirds in masi_distance
  • Avoid retaining bllip import exceptions
  • Fix word_tokenize: pad opening single quote before multi-letter words.
  • Implement Tree.pformat_latex_forest.
  • Prevent module hijacking in inline imports.
  • Fix ReDoS in TweetTokenizer URL and email regexes.

Thanks to the following contributors to 3.10.1: Abhinav, Litesh Ghute, Eric Kafe, Eryk Kaźmierczak, Selim C., Muhtasim Munif Fahim, Triniti K., and Tom Y. Mitich.

Version 3.10.0 2026-06-11

  • Enforce the stricter nltk.pathsec security policy by default
  • Document the new security model and migration guidance
  • Harden resource loading against path traversal and SSRF/DNS-rebinding
  • Harden downloader path handling and block XML entity expansion
  • Close remaining corpus-reader security edge cases
  • Replace unsafe exec() usage in the utility CLI

... (truncated)

Commits
  • bd49f90 allow escaped brackets in Tree.fromstring (#3694)
  • 27b8ad6 don't crash chomsky_normal_form on terminals with siblings (#3693)
  • 52227d2 Use os.name for Windows path handling (#3605)
  • 06c0e2c Avoid RIBES zero division on empty inputs (#3604)
  • a167389 Treat missing unzip output as stale (#3607)
  • c94c967 Fix EOF empty document bug in IEER corpus reader (#3648)
  • 94a259c Enforce restrictive primitive type checking in pathsec wrappers (#3692)
  • 5ac475d fix(security): isolate Stanford Java options and clean temp files (#3683)
  • 986f26e ci(deps): bump the github-actions group with 3 updates (#3691)
  • f26b375 fix(security): prevent pickle RCE in TransitionParser model loading (CWE-502)...
  • Additional commits viewable in compare view

Updates onnx from 1.13.0 to 1.22.0

Release notes

Sourced from onnx's releases.

v1.22.0

ONNX v1.22.0 is now available with exciting new features! We would like to thank everyone who contributed to this release! Please visit onnx.ai to learn more about ONNX and associated projects.

What's Changed

Breaking Changes and Deprecations

Spec and Operator

Two new operators LinearAttention-27 and CausalConvWithState-27 were introduced.

Reference Implementation

Utilities and Tools

Build, CI and Tests

... (truncated)

Commits

Updates pillow from 10.0.1 to 12.3.0

Release notes

Sourced from pillow's releases.

12.3.0

https://pillow.readthedocs.io/en/stable/releasenotes/12.3.0.html

Removals

Documentation

Dependencies

Testing

... (truncated)

Changelog

Sourced from pillow's changelog.

Changelog (Pillow)

11.1.0 and newer

See GitHub Releases:

11.0.0 (2024-10-15)

  • Update licence to MIT-CMU #8460 [hugovk]

  • Conditionally define ImageCms type hint to avoid requiring core #8197 [radarhere]

  • Support writing LONG8 offsets in AppendingTiffWriter #8417 [radarhere]

  • Use ImageFile.MAXBLOCK when saving TIFF images

@dependabot
Bump the pip group across 4 directories with 11 updates
61f07e5 
Bumps the pip group with 9 updates in the /examples/research_projects/decision_transformer directory:

| Package | From | To |
| --- | --- | --- |
| [aiohttp](https://github.com/aio-libs/aiohttp) | `3.8.5` | `3.14.3` |
| [cryptography](https://github.com/pyca/cryptography) | `42.0.0` | `50.0.0` |
| [gitpython](https://github.com/gitpython-developers/GitPython) | `3.1.32` | `3.1.58` |
| [keras](https://github.com/keras-team/keras) | `2.8.0` | `3.15.0` |
| [nltk](https://github.com/nltk/nltk) | `3.7` | `3.10.0` |
| [onnx](https://github.com/onnx/onnx) | `1.13.0` | `1.22.0` |
| [pillow](https://github.com/python-pillow/Pillow) | `10.0.1` | `12.3.0` |
| [pyasn1](https://github.com/pyasn1/pyasn1) | `0.4.8` | `0.6.4` |
| [ray](https://github.com/ray-project/ray) | `1.11.0` | `2.56.0` |

Bumps the pip group with 1 update in the /examples/research_projects/distillation directory: [gitpython](https://github.com/gitpython-developers/GitPython).
Bumps the pip group with 2 updates in the /examples/research_projects/lxmert directory: [mistune](https://github.com/lepture/mistune) and [tornado](https://github.com/tornadoweb/tornado).
Bumps the pip group with 2 updates in the /examples/research_projects/visual_bert directory: [mistune](https://github.com/lepture/mistune) and [tornado](https://github.com/tornadoweb/tornado).


Updates `aiohttp` from 3.8.5 to 3.14.3
- [Changelog](https://github.com/aio-libs/aiohttp/blob/master/CHANGES.rst)
- [Commits](aio-libs/aiohttp@v3.8.5...v3.14.3)

Updates `cryptography` from 42.0.0 to 50.0.0
- [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst)
- [Commits](pyca/cryptography@42.0.0...50.0.0)

Updates `gitpython` from 3.1.32 to 3.1.58
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](gitpython-developers/GitPython@3.1.32...3.1.58)

Updates `keras` from 2.8.0 to 3.15.0
- [Release notes](https://github.com/keras-team/keras/releases)
- [Commits](keras-team/keras@v2.8.0...v3.15.0)

Updates `nltk` from 3.7 to 3.10.0
- [Release notes](https://github.com/nltk/nltk/releases)
- [Changelog](https://github.com/nltk/nltk/blob/develop/ChangeLog)
- [Commits](nltk/nltk@3.7...v3.10.0)

Updates `onnx` from 1.13.0 to 1.22.0
- [Release notes](https://github.com/onnx/onnx/releases)
- [Changelog](https://github.com/onnx/onnx/blob/main/docs/Changelog-ml.md)
- [Commits](onnx/onnx@v1.13.0...v1.22.0)

Updates `pillow` from 10.0.1 to 12.3.0
- [Release notes](https://github.com/python-pillow/Pillow/releases)
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst)
- [Commits](python-pillow/Pillow@10.0.1...12.3.0)

Updates `pyasn1` from 0.4.8 to 0.6.4
- [Release notes](https://github.com/pyasn1/pyasn1/releases)
- [Changelog](https://github.com/pyasn1/pyasn1/blob/main/CHANGES.rst)
- [Commits](pyasn1/pyasn1@v0.4.8...v0.6.4)

Updates `ray` from 1.11.0 to 2.56.0
- [Release notes](https://github.com/ray-project/ray/releases)
- [Commits](ray-project/ray@ray-1.11.0...ray-2.56.0)

Updates `gitpython` from 3.1.32 to 3.1.58
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](gitpython-developers/GitPython@3.1.32...3.1.58)

Updates `mistune` from 2.0.3 to 3.3.0
- [Release notes](https://github.com/lepture/mistune/releases)
- [Changelog](https://github.com/lepture/mistune/blob/main/docs/changes.rst)
- [Commits](lepture/mistune@v2.0.3...v3.3.0)

Updates `tornado` from 6.3.3 to 6.5.7
- [Changelog](https://github.com/tornadoweb/tornado/blob/master/docs/releases.rst)
- [Commits](tornadoweb/tornado@v6.3.3...v6.5.7)

Updates `mistune` from 2.0.3 to 3.3.0
- [Release notes](https://github.com/lepture/mistune/releases)
- [Changelog](https://github.com/lepture/mistune/blob/main/docs/changes.rst)
- [Commits](lepture/mistune@v2.0.3...v3.3.0)

Updates `tornado` from 6.3.3 to 6.5.7
- [Changelog](https://github.com/tornadoweb/tornado/blob/master/docs/releases.rst)
- [Commits](tornadoweb/tornado@v6.3.3...v6.5.7)

---
updated-dependencies:
- dependency-name: aiohttp
  dependency-version: 3.14.3
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: cryptography
  dependency-version: 50.0.0
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: gitpython
  dependency-version: 3.1.58
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: keras
  dependency-version: 3.15.0
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: nltk
  dependency-version: 3.10.0
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: onnx
  dependency-version: 1.22.0
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: pillow
  dependency-version: 12.3.0
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: pyasn1
  dependency-version: 0.6.4
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: ray
  dependency-version: 2.56.0
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: gitpython
  dependency-version: 3.1.58
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: mistune
  dependency-version: 3.3.0
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: tornado
  dependency-version: 6.5.7
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: mistune
  dependency-version: 3.3.0
  dependency-type: direct:production
  dependency-group: pip
- dependency-name: tornado
  dependency-version: 6.5.7
  dependency-type: direct:production
  dependency-group: pip
...

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@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Aug 13, 2026
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