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MhcPivot query update #886

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MhcPivot query update #886

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7 changes: 4 additions & 3 deletions snprc_ehr/resources/queries/snprc_ehr/MhcDataPivot.sql
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Original file line number Diff line number Diff line change
@@ -1,25 +1,26 @@
SELECT
b.Id,
b.modified,
b.Haplotype,
b.Ocid,
b.DataFileSource,
b.modified,
group_concat(b.MhcValue) as MhcValue


FROM (
SELECT
b.Id,
b.Haplotype,
b.Ocid,
b.MhcValue,
b.DataFileSource,
b.Modified
cast(b.modified as varchar) as modified
FROM snprc_ehr.MhcData as b
) as b

GROUP BY b.id, b.ocid, b.DataFileSource, b.haplotype, b.modified

PIVOT MhcValue BY Haplotype IN
(select distinct Haplotype from snprc_ehr.MhcData order by Haplotype
(select distinct ltrim(rtrim(Haplotype)) as Haplotype from snprc_ehr.MhcData order by Haplotype

)
2 changes: 1 addition & 1 deletion snprc_ehr/resources/source_queries/create_v_MchStatus.sql
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Expand Up @@ -44,7 +44,7 @@ SELECT m.[Animal ID] AS id ,

FROM dbo.MhcStatus AS m -- select primates only from the TxBiomed colony
INNER JOIN labkey_etl.V_DEMOGRAPHICS AS d ON d.id = RIGHT(SPACE(6) + m.[Animal ID], 6)
WHERE [A001 Status] IS NOT NULL AND [B008 Status] IS NOT NULL AND [B017 Status] IS NOT NULL AND [B003 Status] IS NOT NULL
WHERE [A001 Status] IS NOT NULL OR [B008 Status] IS NOT NULL OR [B017 Status] IS NOT NULL AND [B003 Status] IS NOT NULL

GO

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