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aggregateAcrossCells: how to provide a custom function?

Status: Open.

#36 In LTLA/scuttle;

· SamGG opened on Sep 22, 2025

aggregateAcrossCells Error: "New 'sample_id's must map uniquely" only in SpatialExperiment

Status: Open.

#35 In LTLA/scuttle;

· lahuuki opened on Apr 17, 2025

Aggregating functions and NAs

Status: Open.

#33 In LTLA/scuttle;

· TuomasBorman opened on Nov 11, 2024

downsampleMatrix returns sparse when it should return dense result

Status: Open.

#32 In LTLA/scuttle;

· mschubert opened on Oct 1, 2024

Error in evaluating the argument 'x' in selecting a method for function 'colnames': subscript out of bounds

Status: Open.

#26 In LTLA/scuttle;

· RunyuXia opened on Dec 3, 2023

calculateAverage() throw error 'rowMeans' : size factors should be positive

Status: Open.

#24 In LTLA/scuttle;

· boutrys opened on Jul 26, 2023

aggregateAcrossCells() no longer works over multiple assays in SCE

Status: Open.

#17 In LTLA/scuttle;

· AnnaAMonaco opened on Aug 10, 2022

How to recover gene expression used for scran::pairwiseTTests()

Status: Open.

#16 In LTLA/scuttle;

· ewijaya opened on Mar 8, 2022

No. of discarded cells do not add up?

Status: Open.

#15 In LTLA/scuttle;

· shaln opened on Jan 11, 2022

unable to install scuttle

Status: Open.

#14 In LTLA/scuttle;

· wonliy opened on Dec 9, 2021

makePerCellTbl

Status: Open.

#13 In LTLA/scuttle;

· robertamezquita opened on Aug 12, 2021

logNormCounts - log transformation with different log base?

Status: Open.

#12 In LTLA/scuttle;

· JPGranizo opened on Jun 29, 2021