Skip to content

zarrv3 w/ sharding fusion bug fixes#58

Merged
indecisiveuser merged 0 commit intoJaneliaSciComp:zarrv3from
indecisiveuser:zarrv3
Mar 24, 2026
Merged

zarrv3 w/ sharding fusion bug fixes#58
indecisiveuser merged 0 commit intoJaneliaSciComp:zarrv3from
indecisiveuser:zarrv3

Conversation

@indecisiveuser
Copy link
Copy Markdown
Collaborator

— fixes block parsing when using sharding
— updates naming of mvrecon split_views to SplitDistributeEvenly
— ensures that fusion downsampling jobs on spark are retried

Copy link
Copy Markdown
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

With the new additions in multiview-reconstruction, please call InterestPointsN5.saveInterestPointsStatic() for as much as possible in the parallel run

Copy link
Copy Markdown
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

No no no :) Let's fix the main issue in multiview-reconstruction. Saving calls XmlIOSpimData2.saveInterestPointsInParallel() which should be fine, however it does open a new N5Writer for each correspondence and interest point save. Let's fix it there, specifically in InterestPointsN5.saveCorrespondencesStatic() and saveInterestPointsStatic(), may be complicated by the fact that is has a super class. Let's discuss ...

@indecisiveuser indecisiveuser merged commit 97ef517 into JaneliaSciComp:zarrv3 Mar 24, 2026
@indecisiveuser
Copy link
Copy Markdown
Collaborator Author

Note that this has not yet been merged.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants