Nextflow Workshop - Iowa State University

Overview

This workshop introduces Nextflow, a workflow management system, for building reproducible bioinformatics pipelines on an HPC cluster using Slurm. You’ll create a genomic pipeline performing QC (FastQC), read trimming (BBDuk), and genome size estimation (GenomeScope) using Arabidopsis thaliana Chr2 test data.

Prerequisites

• Basic command-line/Linux skills
• Access to the ISU HPC cluster

Setup

See hello.md for setup instructions.