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PEtab v2 import via amici#1634

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dweindl wants to merge 5 commits intoICB-DCM:developfrom
dweindl:amici_petab_v2
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PEtab v2 import via amici#1634
dweindl wants to merge 5 commits intoICB-DCM:developfrom
dweindl:amici_petab_v2

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@dweindl dweindl commented Oct 29, 2025

Support for PEtab v2 problems via amici.

WIP

@dweindl dweindl self-assigned this Oct 29, 2025
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codecov-commenter commented Oct 29, 2025

⚠️ Please install the 'codecov app svg image' to ensure uploads and comments are reliably processed by Codecov.

Codecov Report

❌ Patch coverage is 77.65957% with 42 lines in your changes missing coverage. Please review.
✅ Project coverage is 84.23%. Comparing base (8aac10c) to head (1ceceb0).
⚠️ Report is 10 commits behind head on develop.

Files with missing lines Patch % Lines
pypesto/petab/objective_creator.py 64.86% 26 Missing ⚠️
pypesto/objective/amici/amici_calculator.py 76.31% 9 Missing ⚠️
pypesto/petab/importer.py 86.04% 6 Missing ⚠️
pypesto/objective/amici/amici.py 96.15% 1 Missing ⚠️
❗ Your organization needs to install the Codecov GitHub app to enable full functionality.
Additional details and impacted files
@@             Coverage Diff             @@
##           develop    #1634      +/-   ##
===========================================
- Coverage    84.32%   84.23%   -0.09%     
===========================================
  Files          164      164              
  Lines        14334    14514     +180     
===========================================
+ Hits         12087    12226     +139     
- Misses        2247     2288      +41     

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@dweindl dweindl added the enhancement New feature or request label Oct 29, 2025
@dweindl dweindl force-pushed the amici_petab_v2 branch 5 times, most recently from e02ee18 to fb8ee2c Compare November 5, 2025 11:51
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