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Evaluate optimal --kmer-size default for PacBio HiFi data

Status: Open.

#15 In HPCBio/dada2-rs;

· cjfields opened on May 22, 2026

learn-errors: investigate residual diffs vs R DADA2 at scale (363 samples)

Status: Open.

#14 In HPCBio/dada2-rs;

· cjfields opened on May 17, 2026

Reduce redundant code in dada and dada-pooled

Status: Open.

#13 In HPCBio/dada2-rs;

· cjfields opened on May 1, 2026

merge-pairs needs an ID sanity check

Status: Open.

#10 In HPCBio/dada2-rs;

· cjfields opened on Apr 29, 2026

Code example for summary

Status: Open.

#8 In HPCBio/dada2-rs;

· cjfields opened on Apr 29, 2026

JSON gzip compression addition?

low priorityLower priority tickets; good to check but not necessaryLower priority tickets; good to check but not necessary

Status: Open.

#6 In HPCBio/dada2-rs;

· cjfields opened on Apr 29, 2026

Benchmarking checklists

low priorityLower priority tickets; good to check but not necessaryLower priority tickets; good to check but not necessary

Status: Open.

#3 In HPCBio/dada2-rs;

· cjfields opened on Apr 24, 2026

Move from JSON as an intermediary format to something more efficient?

low priorityLower priority tickets; good to check but not necessaryLower priority tickets; good to check but not necessary

Status: Open.

Feature

#1 In HPCBio/dada2-rs;

· cjfields opened on Apr 15, 2026