Geode-solutions · BotellaA · Mar 2, 2026 · Mar 7, 2025 · Mar 10, 2025 · Mar 10, 2025
diff --git a/bindings/python/src/mesh/helpers/convert_edged_curve.cpp b/bindings/python/src/mesh/helpers/convert_edged_curve.cpp
@@ -31,10 +31,7 @@ namespace geode
 {
     void define_convert_edged_curve( pybind11::module& module )
     {
-        module
-            .def( "convert_edged_curve3d_into_2d",
-                &convert_edged_curve3d_into_2d )
-            .def( "merge_edged_curves2D", &merge_edged_curves< 2 > )
-            .def( "merge_edged_curves3D", &merge_edged_curves< 3 > );
+        module.def(
+            "convert_edged_curve3d_into_2d", &convert_edged_curve3d_into_2d );
     }
 } // namespace geode
diff --git a/bindings/python/src/mesh/helpers/convert_solid_mesh.cpp b/bindings/python/src/mesh/helpers/convert_solid_mesh.cpp
@@ -36,7 +36,6 @@ namespace geode
             .def( "convert_solid_mesh_into_tetrahedral_solid",
                 &convert_solid_mesh_into_tetrahedral_solid )
             .def( "convert_grid_into_tetrahedral_solid",
-                &convert_grid_into_tetrahedral_solid )
-            .def( "merge_solid_meshes", &merge_solid_meshes );
+                &convert_grid_into_tetrahedral_solid );
     }
 } // namespace geode
diff --git a/bindings/python/src/mesh/helpers/convert_surface_mesh.cpp b/bindings/python/src/mesh/helpers/convert_surface_mesh.cpp
@@ -57,8 +57,6 @@ namespace geode
             .def( "convert_triangulated_surface2d_into_3d",
                 &convert_triangulated_surface2d_into_3d )
             .def( "convert_triangulated_surface3d_into_2d",
-                &convert_triangulated_surface3d_into_2d )
-            .def( "merge_surface_meshes2D", &merge_surface_meshes< 2 > )
-            .def( "merge_surface_meshes3D", &merge_surface_meshes< 3 > );
+                &convert_triangulated_surface3d_into_2d );
     }
 } // namespace geode
diff --git a/bindings/python/src/mesh/helpers/repair_polygon_orientations.cpp b/bindings/python/src/mesh/helpers/repair_polygon_orientations.cpp
@@ -23,6 +23,7 @@
 
 #include "../../common.hpp"
 
+#include <geode/mesh/builder/surface_mesh_builder.hpp>
 #include <geode/mesh/core/surface_mesh.hpp>
 #include <geode/mesh/helpers/repair_polygon_orientations.hpp>
 
@@ -31,10 +32,8 @@ namespace geode
     void define_repair_polygon_orientations( pybind11::module& module )
     {
         module.def( "repair_polygon_orientations2D",
-            static_cast< void ( * )( SurfaceMesh< 2 >& ) >(
-                &repair_polygon_orientations< 2 > ) );
+            &repair_polygon_orientations< 2 > );
         module.def( "repair_polygon_orientations3D",
-            static_cast< void ( * )( SurfaceMesh< 3 >& ) >(
-                &repair_polygon_orientations< 3 > ) );
+            &repair_polygon_orientations< 3 > );
     }
 } // namespace geode
diff --git a/cmake/ConfigureGDAL.cmake b/cmake/ConfigureGDAL.cmake
@@ -27,7 +27,7 @@ ExternalProject_Add(gdal
     BINARY_DIR ${GDAL_PATH}/build
     STAMP_DIR ${GDAL_PATH}/stamp
     GIT_REPOSITORY https://github.com/Geode-solutions/gdal
-    GIT_TAG 18102025
+    GIT_TAG b98359e91c94cfc7486b419da3ba828c98fb31c6
     GIT_SHALLOW ON
     GIT_PROGRESS ON
     GIT_CONFIG core.longpaths=true

diff --git a/cmake/ConfigureMinizip.cmake b/cmake/ConfigureMinizip.cmake
@@ -26,7 +26,7 @@ ExternalProject_Add(minizip
     BINARY_DIR ${MINIZIP_PATH}/build
     STAMP_DIR ${MINIZIP_PATH}/stamp
     GIT_REPOSITORY https://github.com/zlib-ng/minizip-ng
-    GIT_TAG 4.0.7
+    GIT_TAG 4.1.0
     GIT_SHALLOW ON
     GIT_PROGRESS ON
     CMAKE_GENERATOR ${CMAKE_GENERATOR}

diff --git a/cmake/ConfigureNanoflann.cmake b/cmake/ConfigureNanoflann.cmake
@@ -26,7 +26,7 @@ ExternalProject_Add(nanoflann
     BINARY_DIR ${NANOFLANN_PATH}/build
     STAMP_DIR ${NANOFLANN_PATH}/stamp
     GIT_REPOSITORY https://github.com/jlblancoc/nanoflann
-    GIT_TAG v1.5.5
+    GIT_TAG v1.9.0
     GIT_SHALLOW ON
     GIT_PROGRESS ON
     CMAKE_GENERATOR ${CMAKE_GENERATOR}

diff --git a/cmake/ConfigurePybind11.cmake b/cmake/ConfigurePybind11.cmake
@@ -26,7 +26,7 @@ ExternalProject_Add(pybind11
     BINARY_DIR ${PYBIND11_PATH}/build
     STAMP_DIR ${PYBIND11_PATH}/stamp
     GIT_REPOSITORY https://github.com/pybind/pybind11
-    GIT_TAG v2.13.1
+    GIT_TAG v3.0.2
     GIT_SHALLOW ON
     GIT_PROGRESS ON
     CMAKE_GENERATOR ${CMAKE_GENERATOR}

diff --git a/cmake/ConfigureSpdlog.cmake b/cmake/ConfigureSpdlog.cmake
@@ -26,7 +26,7 @@ ExternalProject_Add(spdlog
     BINARY_DIR ${SPDLOG_PATH}/build
     STAMP_DIR ${SPDLOG_PATH}/stamp
     GIT_REPOSITORY https://github.com/gabime/spdlog
-    GIT_TAG v1.14.1
+    GIT_TAG v1.17.0
     GIT_SHALLOW ON
     GIT_PROGRESS ON
     CMAKE_GENERATOR ${CMAKE_GENERATOR}

diff --git a/include/geode/basic/console_progress_logger_client.hpp b/include/geode/basic/console_progress_logger_client.hpp
@@ -55,19 +55,6 @@ namespace geode
         void failed(
             const uuid& progress_logger_id, Logger::LEVEL level ) override;
 
-        [[deprecated]] void start( const uuid& progress_logger_id,
-            const std::string& message,
-            index_t nb_steps ) override;
-
-        [[deprecated]] void update( const uuid& progress_logger_id,
-            index_t current_step,
-            index_t nb_steps ) override;
-
-        [[deprecated]] void completed(
-            const uuid& progress_logger_id ) override;
-
-        [[deprecated]] void failed( const uuid& progress_logger_id ) override;
-
     private:
         IMPLEMENTATION_MEMBER( impl_ );
     };

diff --git a/include/geode/basic/detail/geode_input_impl.hpp b/include/geode/basic/detail/geode_input_impl.hpp
@@ -38,27 +38,6 @@ namespace geode
 {
     namespace detail
     {
-        template < typename Object >
-        void update_default_name( Object& object, std::string_view filename )
-        {
-            if( object.name() == Identifier::DEFAULT_NAME )
-            {
-                IdentifierBuilder{ object }.set_name(
-                    filename_without_extension( filename ).string() );
-            }
-        }
-
-        template < typename Object >
-        void update_default_name(
-            std::unique_ptr< Object >& object, std::string_view filename )
-        {
-            if( object->name() == Identifier::DEFAULT_NAME )
-            {
-                IdentifierBuilder{ *object }.set_name(
-                    filename_without_extension( filename ).string() );
-            }
-        }
-
         template < typename Factory >
         [[nodiscard]] std::unique_ptr< typename Factory::BaseClass >
             geode_object_input_reader( std::string_view& filename )
@@ -80,7 +59,6 @@ namespace geode
             const Timer timer;
             auto input = geode_object_input_reader< Factory >( filename );
             auto object = input->read( std::forward< Args >( args )... );
-            update_default_name( object, filename );
             Logger::info(
                 type, " loaded from ", filename, " in ", timer.duration() );
             return object;

diff --git a/include/geode/basic/identifier.hpp b/include/geode/basic/identifier.hpp
@@ -23,6 +23,8 @@
 
 #pragma once
 
+#include <optional>
+
 #include <geode/basic/common.hpp>
 #include <geode/basic/passkey.hpp>
 #include <geode/basic/pimpl.hpp>
@@ -46,14 +48,12 @@ namespace geode
         friend class bitsery::Access;
 
     public:
-        static constexpr auto DEFAULT_NAME = "default_name";
-
         Identifier( Identifier&& other ) noexcept;
         ~Identifier();
 
         [[nodiscard]] const uuid& id() const;
 
-        [[nodiscard]] std::string_view name() const;
+        [[nodiscard]] const std::optional< std::string >& name() const;
 
         void save_identifier( std::string_view directory ) const;
 

diff --git a/include/geode/basic/progress_logger.hpp b/include/geode/basic/progress_logger.hpp
@@ -36,8 +36,6 @@ namespace geode
     class opengeode_basic_api ProgressLogger
     {
     public:
-        [[deprecated]] ProgressLogger(
-            const std::string& message, index_t nb_steps );
         ProgressLogger(
             Logger::LEVEL level, const std::string& message, index_t nb_steps );
         ~ProgressLogger();

diff --git a/include/geode/basic/progress_logger_client.hpp b/include/geode/basic/progress_logger_client.hpp
@@ -56,20 +56,6 @@ namespace geode
         virtual void failed(
             const uuid& progress_logger_id, Logger::LEVEL level ) = 0;
 
-        [[deprecated]] virtual void start( const uuid& progress_logger_id,
-            const std::string& message,
-            index_t nb_steps ) = 0;
-
-        [[deprecated]] virtual void update( const uuid& progress_logger_id,
-            index_t current_step,
-            index_t nb_steps ) = 0;
-
-        [[deprecated]] virtual void completed(
-            const uuid& progress_logger_id ) = 0;
-
-        [[deprecated]] virtual void failed(
-            const uuid& progress_logger_id ) = 0;
-
     protected:
         ProgressLoggerClient() = default;
     };

diff --git a/include/geode/basic/progress_logger_manager.hpp b/include/geode/basic/progress_logger_manager.hpp
@@ -58,18 +58,6 @@ namespace geode
         static void failed(
             const uuid& progress_logger_id, Logger::LEVEL level );
 
-        [[deprecated]] static void start( const uuid& progress_logger_id,
-            const std::string& message,
-            index_t nb_steps );
-
-        [[deprecated]] static void update( const uuid& progress_logger_id,
-            index_t current_step,
-            index_t nb_steps );
-
-        [[deprecated]] static void completed( const uuid& progress_logger_id );
-
-        [[deprecated]] static void failed( const uuid& progress_logger_id );
-
     private:
         ProgressLoggerManager();
 

diff --git a/include/geode/geometry/aabb.hpp b/include/geode/geometry/aabb.hpp
@@ -70,17 +70,6 @@ namespace geode
 
         [[nodiscard]] const BoundingBox< dimension >& bounding_box() const;
 
-        /*!
-         * @brief Whether or not the queries run on this tree are parallelized.
-         */
-        [[deprecated, nodiscard]] bool parallel() const;
-
-        /*!
-         * @brief Sets whether or not the queries run on this tree are
-         * parallelized.
-         */
-        [[deprecated]] void set_parallel( bool parallel );
-
         /*!
          * @brief Gets all the boxes containing a point
          * @param[in] query the point to test

diff --git a/include/geode/mesh/helpers/convert_edged_curve.hpp b/include/geode/mesh/helpers/convert_edged_curve.hpp
@@ -45,9 +45,4 @@ namespace geode
         convert_edged_curve2d_into_3d( const EdgedCurve2D& curve2d,
             local_index_t axis_to_add,
             double axis_coordinate );
-
-    template < index_t dimension >
-    [[deprecated, nodiscard]] std::unique_ptr< EdgedCurve< dimension > >
-        merge_edged_curves( absl::Span< const std::reference_wrapper<
-                const EdgedCurve< dimension > > > curves );
 } // namespace geode
diff --git a/include/geode/mesh/helpers/convert_solid_mesh.hpp b/include/geode/mesh/helpers/convert_solid_mesh.hpp
@@ -60,9 +60,4 @@ namespace geode
     [[nodiscard]] std::optional< std::unique_ptr< HybridSolid3D > >
         opengeode_mesh_api convert_solid_mesh_into_hybrid_solid(
             const SolidMesh3D& solid );
-
-    [[deprecated, nodiscard]] std::unique_ptr< SolidMesh3D >
-        opengeode_mesh_api merge_solid_meshes(
-            absl::Span< const std::reference_wrapper< const SolidMesh3D > >
-                solids );
 } // namespace geode
diff --git a/include/geode/mesh/helpers/convert_surface_mesh.hpp b/include/geode/mesh/helpers/convert_surface_mesh.hpp
@@ -101,9 +101,4 @@ namespace geode
         opengeode_mesh_api convert_triangulated_surface3d_into_2d(
             const TriangulatedSurface3D& surface3d,
             local_index_t axis_to_remove );
-
-    template < index_t dimension >
-    [[deprecated, nodiscard]] std::unique_ptr< SurfaceMesh< dimension > >
-        merge_surface_meshes( absl::Span< const std::reference_wrapper<
-                const SurfaceMesh< dimension > > > surfaces );
 } // namespace geode
diff --git a/include/geode/mesh/helpers/internal/copy.hpp b/include/geode/mesh/helpers/internal/copy.hpp
@@ -88,7 +88,10 @@ namespace geode
         template < typename MeshFrom, typename Builder >
         void copy_meta_info( const MeshFrom& from, Builder& builder )
         {
-            builder.set_name( from.name() );
+            if( const auto name = from.name() )
+            {
+                builder.set_name( name.value() );
+            }
         }
 
         void copy_attributes(

diff --git a/include/geode/mesh/helpers/ray_tracing.hpp b/include/geode/mesh/helpers/ray_tracing.hpp
@@ -76,10 +76,6 @@ namespace geode
         };
 
     public:
-        [[deprecated]] RayTracing2D(
-            const EdgedCurve2D& mesh, const Ray2D& ray );
-        [[deprecated]] RayTracing2D(
-            const EdgedCurve2D& mesh, const InfiniteLine2D& infinite_line );
         RayTracing2D( const EdgedCurve2D& mesh,
             const BoundingBox2D& bbox,
             const Ray2D& ray );
@@ -135,10 +131,6 @@ namespace geode
         };
 
     public:
-        [[deprecated]] RayTracing3D(
-            const SurfaceMesh3D& mesh, const Ray3D& ray );
-        [[deprecated]] RayTracing3D(
-            const SurfaceMesh3D& mesh, const InfiniteLine3D& infinite_line );
         RayTracing3D( const SurfaceMesh3D& mesh,
             const BoundingBox3D& bbox,
             const Ray3D& ray );

diff --git a/include/geode/mesh/helpers/remove_vertex_duplication.hpp b/include/geode/mesh/helpers/remove_vertex_duplication.hpp
diff --git a/include/geode/mesh/helpers/repair_polygon_orientations.hpp b/include/geode/mesh/helpers/repair_polygon_orientations.hpp
@@ -33,10 +33,6 @@ namespace geode
 
 namespace geode
 {
-    template < index_t dimension >
-    void OPENGEODE_MESH_DEPRECATED repair_polygon_orientations(
-        SurfaceMesh< dimension >& mesh );
-
     template < index_t dimension >
     void repair_polygon_orientations( const SurfaceMesh< dimension >& mesh,
         SurfaceMeshBuilder< dimension >& builder );