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feat: Add new meshes for the tests and implemente the missing one for the post-processing filter #214

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Merged
paloma-martinez merged 9 commits into from
Feb 3, 2026
Merged

feat: Add new meshes for the tests and implemente the missing one for the post-processing filter #214

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43c0db8
add meshes for the test improvment
Jan 26, 2026
e03afef
Update GeosExtractBlock test with the new meshes
Jan 26, 2026
f4b1c48
Add the tests for GeosBlockMerge filter
Jan 26, 2026
5d2e6a0
Add the test for GeomechanicsCalculator
Jan 27, 2026
029190a
Update to the last version of the main
Jan 27, 2026
1c729d8
Add meshes documentation
Jan 27, 2026
11210ae
Remove unused meshes
Jan 27, 2026
d7d15d8
fix yapf
Jan 27, 2026
4a6fdd7
Apply Paloma's suggestions
Feb 3, 2026
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6 changes: 4 additions & 2 deletions geos-processing/tests/conftest.py
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Expand Up @@ -44,8 +44,10 @@ def _get_dataset( datasetType: str ) -> Union[ vtkMultiBlockDataSet, vtkPolyData
vtkFilename = "data/domain_res5_id.vtu"
elif datasetType == "emptydataset":
vtkFilename = "data/domain_res5_id_empty.vtu"
elif datasetType == "meshGeosExtractBlockTmp":
vtkFilename = "data/meshGeosExtractBlockTmp.vtm"
elif datasetType == "singlePhasePoromechanicsVTKOutput":
vtkFilename = "data/singlePhasePoromechanics_FaultModel_well_seq/singlePhasePoromechanicsVTKOutput.vtm"
elif datasetType == "extractAndMergeVolume":
vtkFilename = "data/singlePhasePoromechanics_FaultModel_well_seq/extractAndMergeVolume.vtu"

datapath: str = os.path.join( os.path.dirname( os.path.realpath( __file__ ) ), vtkFilename )
reader.SetFileName( datapath )
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16 changes: 0 additions & 16 deletions geos-processing/tests/data/meshGeosExtractBlockTmp.vtm
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6 changes: 6 additions & 0 deletions geos-processing/tests/data/singlePhasePoromechanics_FaultModel_well_seq/README.md
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Those meshes used for testing post-processing filters came from a GEOS simulation with the version of the 27th November 2025.
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@paloma-martinez paloma-martinez Feb 2, 2026

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Commit number would be more relevant than day.

The XML-files used to launch the simulation came from the integrated tests of GEOS: singlePhasePoromechanics_FaultModel_well_seq_smoke.xml located [here](https://github.com/GEOS-DEV/GEOS/tree/develop/inputFiles/poromechanicsFractures)

The ParaView plugin "PVGeosBlockExtractAndMerge" has been use to get the vtm with the block "CellElementRegion"from the simulation pvd result. The integrated ParaView plugin "merge block" has been use to get a vtu with the data of the second time step.
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@paloma-martinez paloma-martinez Feb 2, 2026

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Suggested change
The ParaView plugin "PVGeosBlockExtractAndMerge" has been use to get the vtm with the block "CellElementRegion"from the simulation pvd result. The integrated ParaView plugin "merge block" has been use to get a vtu with the data of the second time step.
The ParaView plugin "PVGeosBlockExtractAndMerge" has been used to get the vtm with the block "CellElementRegion" from the simulation pvd result. The integrated ParaView plugin "merge block" has been used to get a vtu with the data of the second time step.


The mesh singlePhasePoromechanicsVTKOutput.vtm has been save as vtm from the the simulation pvd result with ParaView 6.
231 changes: 231 additions & 0 deletions ...cessing/tests/data/singlePhasePoromechanics_FaultModel_well_seq/extractAndMergeVolume.vtu
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33 changes: 33 additions & 0 deletions ...s/data/singlePhasePoromechanics_FaultModel_well_seq/singlePhasePoromechanicsVTKOutput.vtm
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<VTKFile type="vtkMultiBlockDataSet" version="1.0" byte_order="LittleEndian" header_type="UInt64" compressor="vtkZLibDataCompressor">
<vtkMultiBlockDataSet>
<Block index="0" name="mesh1">
<Block index="0" name="Level0">
<Block index="0" name="CellElementRegion">
<Block index="0" name="Region">
<DataSet index="0" name="rank_0" file="singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_0_0.vtu"/>
<DataSet index="1" name="rank_1" file="singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_1_0.vtu"/>
</Block>
</Block>
<Block index="1" name="WellElementRegion">
<Block index="0" name="wellRegion1">
<DataSet index="0" name="rank_0" file="singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_2_0.vtu"/>
</Block>
<Block index="1" name="wellRegion2">
<DataSet index="0" name="rank_0" file="singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_3_0.vtu"/>
</Block>
</Block>
<Block index="2" name="SurfaceElementRegion">
<Block index="0" name="Fault">
<DataSet index="0" name="rank_0" file="singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_4_0.vtu"/>
<DataSet index="1" name="rank_1" file="singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_5_0.vtu"/>
</Block>
</Block>
</Block>
</Block>
</vtkMultiBlockDataSet>
<FieldData>
<DataArray type="Float64" Name="TimeValue" NumberOfTuples="1" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
</FieldData>
</VTKFile>
205 changes: 205 additions & 0 deletions ...odel_well_seq/singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_0_0.vtu
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205 changes: 205 additions & 0 deletions ...odel_well_seq/singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_1_0.vtu
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100 changes: 100 additions & 0 deletions ...odel_well_seq/singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_2_0.vtu
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<VTKFile type="UnstructuredGrid" version="1.0" byte_order="LittleEndian" header_type="UInt64" compressor="vtkZLibDataCompressor">
<UnstructuredGrid>
<FieldData>
<DataArray type="Float64" Name="TIME" NumberOfTuples="1" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
</FieldData>
<Piece NumberOfPoints="2" NumberOfCells="1">
<PointData>
</PointData>
<CellData>
<DataArray type="Float64" Name="water_dEnthalpy" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_enthalpy" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_dDensity" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_dViscosity" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_density" format="binary" RangeMin="1325" RangeMax="1325">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAADgAAAAAAAAA=eF5jYACCLVMcAAOMAYk=
</DataArray>
<DataArray type="Float64" Name="water_viscosity" format="binary" RangeMin="0.001" RangeMax="0.001">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAAEAAAAAAAAAA=eF77s/LjJd+kAHsAGYAEpw==
</DataArray>
<DataArray type="Float64" Name="water_internalEnergy" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_dInternalEnergy" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Int32" Name="ghostRank" format="binary" RangeMin="-2" RangeMax="-2">
AQAAAAAAAAAAgAAAAAAAAAQAAAAAAAAADAAAAAAAAAA=eF779///fwAJ9gP8
</DataArray>
<DataArray type="Float64" Name="pressure" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="connectionRate" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Int64" Name="localToGlobalMap" format="binary" RangeMin="6063" RangeMax="6063">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAADAAAAAAAAAA=eF5bL84ABgAGIQDH
</DataArray>
<DataArray type="Float64" Name="temperature" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="elementCenter" NumberOfComponents="3" format="binary" RangeMin="7738.378383098102" RangeMax="7738.378383098102">
AQAAAAAAAAAAgAAAAAAAABgAAAAAAAAAFAAAAAAAAAA=eF5jYAACia0ODMh0x+QDACCyA/Y=
<InformationKey name="L2_NORM_RANGE" location="vtkDataArray" length="2">
<Value index="0">
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</Value>
<Value index="1">
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</Value>
</InformationKey>
</DataArray>
<DataArray type="Float64" Name="elementVolume" format="binary" RangeMin="78.53981633974485" RangeMax="78.53981633974485">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAAEAAAAAAAAAA=eF6zcb4a2bMo2AEAD3QDbw==
</DataArray>
</CellData>
<Points>
<DataArray type="Float32" Name="Points" NumberOfComponents="3" format="binary" RangeMin="7636.753236814713" RangeMax="8035.546029984521">
AQAAAAAAAAAAgAAAAAAAABgAAAAAAAAAFQAAAAAAAAA=eF5jOLDClQGEQQDGdpA5CgBhmQfW
<InformationKey name="L2_NORM_FINITE_RANGE" location="vtkDataArray" length="2">
<Value index="0">
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</Value>
<Value index="1">
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</Value>
</InformationKey>
<InformationKey name="L2_NORM_RANGE" location="vtkDataArray" length="2">
<Value index="0">
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</Value>
<Value index="1">
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</Value>
</InformationKey>
</DataArray>
</Points>
<Cells>
<DataArray type="Int64" Name="connectivity" format="binary" RangeMin="0" RangeMax="1">
AQAAAAAAAAAAgAAAAAAAABAAAAAAAAAADgAAAAAAAAA=eF5jYIAARigNAAAYAAI=
</DataArray>
<DataArray type="Int64" Name="offsets" format="binary" RangeMin="2" RangeMax="2">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYoAAAAAYAAM=
</DataArray>
<DataArray type="UInt8" Name="types" format="binary" RangeMin="3" RangeMax="3">
AQAAAAAAAAAAgAAAAAAAAAEAAAAAAAAACQAAAAAAAAA=eF5jBgAABAAE
</DataArray>
</Cells>
</Piece>
</UnstructuredGrid>
</VTKFile>
100 changes: 100 additions & 0 deletions ...odel_well_seq/singlePhasePoromechanicsVTKOutput/singlePhasePoromechanicsVTKOutput_3_0.vtu
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<VTKFile type="UnstructuredGrid" version="1.0" byte_order="LittleEndian" header_type="UInt64" compressor="vtkZLibDataCompressor">
<UnstructuredGrid>
<FieldData>
<DataArray type="Float64" Name="TIME" NumberOfTuples="1" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
</FieldData>
<Piece NumberOfPoints="2" NumberOfCells="1">
<PointData>
</PointData>
<CellData>
<DataArray type="Float64" Name="water_dEnthalpy" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_enthalpy" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_dDensity" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_dViscosity" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_density" format="binary" RangeMin="1325" RangeMax="1325">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAADgAAAAAAAAA=eF5jYACCLVMcAAOMAYk=
</DataArray>
<DataArray type="Float64" Name="water_viscosity" format="binary" RangeMin="0.001" RangeMax="0.001">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAAEAAAAAAAAAA=eF77s/LjJd+kAHsAGYAEpw==
</DataArray>
<DataArray type="Float64" Name="water_internalEnergy" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="water_dInternalEnergy" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Int32" Name="ghostRank" format="binary" RangeMin="-2" RangeMax="-2">
AQAAAAAAAAAAgAAAAAAAAAQAAAAAAAAADAAAAAAAAAA=eF779///fwAJ9gP8
</DataArray>
<DataArray type="Float64" Name="pressure" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="connectionRate" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Int64" Name="localToGlobalMap" format="binary" RangeMin="6064" RangeMax="6064">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAADAAAAAAAAAA=eF7bIM4ABgAGKQDI
</DataArray>
<DataArray type="Float64" Name="temperature" format="binary" RangeMin="0" RangeMax="0">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYIAAAAAIAAE=
</DataArray>
<DataArray type="Float64" Name="elementCenter" NumberOfComponents="3" format="binary" RangeMin="7738.378383098102" RangeMax="7738.378383098102">
AQAAAAAAAAAAgAAAAAAAABgAAAAAAAAAFAAAAAAAAAA=eF5jYAACia0HGJDpjskHAC2yBPY=
<InformationKey name="L2_NORM_RANGE" location="vtkDataArray" length="2">
<Value index="0">
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</Value>
<Value index="1">
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</Value>
</InformationKey>
</DataArray>
<DataArray type="Float64" Name="elementVolume" format="binary" RangeMin="78.53981633974485" RangeMax="78.53981633974485">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAAEAAAAAAAAAA=eF6zcb4a2bMo2AEAD3QDbw==
</DataArray>
</CellData>
<Points>
<DataArray type="Float32" Name="Points" NumberOfComponents="3" format="binary" RangeMin="7636.753236814713" RangeMax="8035.546029984521">
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</Value>
<Value index="1">
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</InformationKey>
<InformationKey name="L2_NORM_RANGE" location="vtkDataArray" length="2">
<Value index="0">
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</Value>
<Value index="1">
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</Value>
</InformationKey>
</DataArray>
</Points>
<Cells>
<DataArray type="Int64" Name="connectivity" format="binary" RangeMin="0" RangeMax="1">
AQAAAAAAAAAAgAAAAAAAABAAAAAAAAAADgAAAAAAAAA=eF5jYIAARigNAAAYAAI=
</DataArray>
<DataArray type="Int64" Name="offsets" format="binary" RangeMin="2" RangeMax="2">
AQAAAAAAAAAAgAAAAAAAAAgAAAAAAAAACwAAAAAAAAA=eF5jYoAAAAAYAAM=
</DataArray>
<DataArray type="UInt8" Name="types" format="binary" RangeMin="3" RangeMax="3">
AQAAAAAAAAAAgAAAAAAAAAEAAAAAAAAACQAAAAAAAAA=eF5jBgAABAAE
</DataArray>
</Cells>
</Piece>
</UnstructuredGrid>
</VTKFile>
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