Fischbach Lab

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1. ninjaMap ninjaMap Public

   Compute strain abundance in a defined microbial community

   Python 10 2

2. nf-ninjamap nf-ninjamap Public

   ninjamap pipeline in nextflow

   Python 7 2

3. nf-reads-profiler nf-reads-profiler Public

   Nextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.

   Nextflow 4 3

4. nf-blast nf-blast Public

   Blast tools using Nextflow on AWS Batch using database on a shared file system.

   Nextflow 1

5. nf-hybridassembly nf-hybridassembly Public

   Hybrid assembly pipeline in nextflow

   Shell 1

6. nf-cctyper nf-cctyper Public

   Nextflow 1