Add recipe and tomogram processing for B24 SXT tomogram alignment

[stephen-riggs]

DLS B24 runs cryo-SXT which is compatible with AreTomo3, denoising and segmentation. This PR adds in SXT support to the AreTomo service. Imod batchruntomo support will be a separate PR.

This adds capacity to read in a txrm file using txrm2tiff and then align it in AreTomo3. Less information needs to be provided as pixel size and angles are in the txrm file. It also behaves a little differently as the txrm is already a stack so tilt stacking is not needed, but mrc conversion is needed.

Reconstruction is set to use WBP as SART seems to work less well.

The pixel size is artificially set to 10A after processing so that the segmentation does not attempt to upscale.

Currently external reference images are not supported.

[codecov]

Codecov Report

❌ Patch coverage is 75.64103% with 19 lines in your changes missing coverage. Please review.
✅ Project coverage is 83.84%. Comparing base (8a360af) to head (ca7c879).
⚠️ Report is 2 commits behind head on main.

Additional details and impacted files

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- Coverage   83.85%   83.84%   -0.02%     
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  Files          68       68              
  Lines        8618     8664      +46     
  Branches     1160     1170      +10     
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+ Hits         7227     7264      +37     
- Misses        954      961       +7     
- Partials      437      439       +2     

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[tieneupin]

The code looks fine on the whole! Just some comments on optimisations and whether there are more immediately readable ways to track if the current dataset being processed is TEM tomo or SXT.