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refactor: Merge in 1.1.0rc2#32

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nromashchenko merged 21 commits intomainfrom
develop
Mar 3, 2026
Merged

refactor: Merge in 1.1.0rc2#32
nromashchenko merged 21 commits intomainfrom
develop

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Current develop contains the changes introduced by 1.1.0rc, 1.1.0rc2:

  • Added a python wrapper for the main snakemake workflow. Foldtree is called with foldtree command
  • Restructured the project to make it installable with pip and conda
  • Split and minimized conda dependencies for conda envs run less than forever
  • updated Colab for the new syntax
  • updated readme and examples

@nromashchenko nromashchenko changed the title Merge in 1.1.0rc2 refactor: Merge in 1.1.0rc2 Mar 3, 2026
@nromashchenko nromashchenko merged commit b43fbf2 into main Mar 3, 2026
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