HyperTools 1.0.0 — release to master (review & documentation; do not merge yet) - #281

Merged

jeremymanning merged 80 commits into

Jul 24, 2026

Commits on Jul 2, 2026

Ignore local virtualenv and tooling directories (.venv, .omc)

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Add session notes for hypertools 2.0 kickoff

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Add hypertools 2.0 roadmap synthesizing refactor analysis and master audit

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Scaffold 2.0 testing infrastructure: screenshot harness, baseline generator, dev notebook

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Roadmap: elevate multilevel indices, stack/unstack, robust coloring, mixture models to first-class 2.0 features; record approved backend='auto' policy

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Dev notebook: add acceptance targets for multilevel indices, mixture models, robust coloring

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Notes: record Jeremy's confirmed 2.0 design decisions

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Phase 0: pyproject.toml packaging, CI modernization, remove memoize, lazy heavy imports

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Phase 0: sklearn HDBSCAN, remove SyntaxWarning filter, fix redundant re-formatting, scope plot styling (fixes #259)

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Phase 1: mixture-model soft clustering + robust color mapping (mat2colors)

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Phase 1: nested-list input with multilevel styling in plot()

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Phase 2: plotly interactive backend with backend='auto' policy

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Verification evidence: 44-case screenshot matrix, executed dev notebook, backend fix, README 2.0 docs

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Notes: mark roadmap phases 0-2 complete

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Notes: final pre-PR status

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Ignore docs gallery build byproducts

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Notes: PR #270 opened

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Fall back to non-interactive backend when GUI toolkit fails at render time

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Notes: PR #270 CI fully green (24/24)

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Backend visual parity + multicolored lines + is_line fix

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Retire deprecated kwargs + stack/unstack apply_model core

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Complete PR feedback: parity evidence, expanded matrix, gallery + docs for all 2.0 features

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Notes: third work block complete, PR evidence posted

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Review round 2: animation export, overlapping mixtures, parity refinements, plotly gallery

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Notes: review round 2 complete

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Harden example-data downloads against rate-limited/corrupt responses

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Retry dataset downloads with backoff; share example-data cache across CI jobs

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Notes: round 2 closed, CI green, evidence posted

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Round 3: SVG export, plotly rotation, hyperalign n_iter, shapes zoo, multi-panel + cache verification

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Round 3 finale: pydata theme, demos, weights reconstruction, evidence regen

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Notes: round 3 complete

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Notes: round 3 closed, evidence posted

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Round 4: repeated hyperalignment, serial animation mode, animation quality fixes, embedding demos

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Round 4.5: weights recipe solved, SRM n_iter, single-call cluster syntax, 30fps standard, rebuilt demos

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Notes: round 4.5 shipped

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Weights animation: recover the looping bundle (nn=36, spin mode)

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Weights animation: sliding-window style in a fixed space

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Streaming data support (#101) + ContextLab Furo docs theme

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Theme evidence: Furo/ContextLab screenshots (index + streaming tutorial)

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Commits on Jul 3, 2026

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Commits on Jul 23, 2026