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Implementation of different tree ESS estimators:

  • The probabilistic approach Expected Difference of Clade Frequencies (EDCF) using a Bayesian (MCMC) and ML estimators.
  • Reimplementation of frechetESS by Magee et al.; see R package treess repo for the original version.
  • Reimplementation of approximateESS by Lanfear et al.; see R pack RWTY repo for the original version.

These methods were used in experiments in the paper "On estimating the effective sample size of phylogenetic trees in an autocorrelated chain".

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Probabilistic tree ESS estimators based expected difference of clade frequencies.

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