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SAM file generated by lra CONTIG mode is truncated and cannot be compressed by samtools

Status: Open.

#41 In ChaissonLab/LRA;

· Milia1368 opened on Jan 16, 2026

Lra index

Status: Open.

#40 In ChaissonLab/LRA;

· Geil625 opened on Apr 10, 2024

Error during execution

Status: Open.

#37 In ChaissonLab/LRA;

· frankMusacchia opened on Oct 2, 2022

reads with no quality score

Status: Open.

#35 In ChaissonLab/LRA;

· ziphra opened on May 27, 2022

Installation issue

Status: Open.

#34 In ChaissonLab/LRA;

· valentinavan opened on Apr 13, 2022

RG tag

Status: Open.

#29 In ChaissonLab/LRA;

· woodoo46 opened on Sep 29, 2021

problems for detecting SVs

Status: Open.

#27 In ChaissonLab/LRA;

· azure-twilight opened on Aug 7, 2021

unaligned reads

Status: Open.

#23 In ChaissonLab/LRA;

· husamia opened on Jun 21, 2021

LRA version in conda

Status: Open.

#20 In ChaissonLab/LRA;

· biorococo opened on Jun 9, 2021

lra index stops without error

Status: Open.

#19 In ChaissonLab/LRA;

· imdanique opened on Jun 4, 2021

Advice for greater sensitivity to translocations with CuteSV

Status: Open.

#18 In ChaissonLab/LRA;

· zhemingfan opened on Jun 3, 2021

LRA Handling of Ambiguity

Status: Open.

#15 In ChaissonLab/LRA;

· zhemingfan opened on Apr 8, 2021